| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF015K24 | Sequence | 153 | 005136 (6) | 658 | 005710 (3) | ref|XP_009774928.1| | 2e-46 | PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest | |||
| JMSF020I12 | Sequence | 669 | 005136 (6) | ref|XP_006339100.1| | 4e-56 | PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube | 717 | 005710 (3) | ref|XP_009774928.1| | 1e-71 | PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest |
| JMSF028O05 | Sequence | 656 | 005136 (6) | ref|XP_006339100.1| | 2e-53 | PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Solanum tube | 719 | 005710 (3) | ref|XP_009774928.1| | 7e-74 | PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Nicotiana sylvest |
This contig is upended
. : . : . : . : . : . :
rJMSF028O05+ AA
____________________________________________________________
consensus AA
. : . : . : . : . : . :
rJMSF020I12+ CAATTTGCCTGAAGAGCCTGGCAGTTTCAAGAAATTTGTTGAACTTTGTGGGGCCCATG
rJMSF028O05+ CCAATTTGCCTGAAGAGCCTGGCAGTTTCAAGAAATTTGTGAAC--TTGTGGGGCCCATG
____________________________________________________________
consensus CCAATTTGCCTGAAGAGCCTGGCAGTTTCAAGAAATTTGTTGACCTTTGTGGGGCCCATG
. : . : . : . : . : . :
rJMSF015K24+ CTGAGTTCAGATACAGATACAGTTCTGGTCGAGCACAAAGTNTGGTNCTATAC
rJMSF020I12+ AACATTACTGAGTTCAGATACAGATACAGTTCTGGTCGAGCACAAAGTTTGGTACTATAC
rJMSF028O05+ AACATTACTGAGTTCAGATACAGATACAGTTCTGGTCGAGCACAAAGTTTGGTACTATAC
____________________________________________________________
consensus AACATTACTGAGTTCAGATACAGATACAGTTCTGGTCGAGCACAAAGTTTGGTACTATAC
. : . : . : . : . : . :
rJMSF015K24+ AGAGTTAGTGTTCATACAAAAATGGAACNTGATGCAATGGTGGAGAGGATGATACTCTCT
rJMSF020I12+ AGAGTTAGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGATACTCTCT
rJMSF028O05+ AGAGTTAGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGATACTCTCT
____________________________________________________________
consensus AGAGTTAGTGTTCATACAAAAATGGAACTTGATGCAATGGTGGAGAGGATGATACTCTCT
. : . : . : . : . : . :
rJMSF015K24+ GATTTACATACCATTGATCTCACTGATAATGACCTTGTCAAAGATCATNTACGCCNTTTG
rJMSF020I12+ GATTTACATACCATTGATCTCACTGATAATGACCTTGTCAAAGATCATCTACGCCATTTG
rJMSF028O05+ GATTTACATACCATTGATCTCACTGATAATGACCTTGTCAAAGATCATCTACGCCATTTG
____________________________________________________________
consensus GATTTACATACCATTGATCTCACTGATAATGACCTTGTCAAAGATCATCTACGCCATTTG
. : . : . : . : . : . :
rJMSF015K24+ ATTGGTGGGCGATGTAGTGTAGAAGATGAACTTCTTTGCCGGTTTATTTTCCCAGAGAGG
rJMSF020I12+ ATTGGTGGGCGATGTAGTGTAGAAGATGAACTTCTTTGCCGGTTTATTTTCCCAGAGAGG
rJMSF028O05+ ATTGGTGGGCGATGTAGTGTAGAAGATGAACTTCTTTGCCGGTTTATTTTCCCAGAGAGG
____________________________________________________________
consensus ATTGGTGGGCGATGTAGTGTAGAAGATGAACTTCTTTGCCGGTTTATTTTCCCAGAGAGG
. : . : . : . : . : . :
rJMSF015K24+ CCTGGTGCCCTATNGGAATTNTTAGACGNNTTCAGCCCNCAATGGA--ATAACTTTGTTC
rJMSF020I12+ CCTGGTGCCCTATTGGAATTTTTAGACGCTTTCAGCCCACAATGGAATATAACTTTGTTC
rJMSF028O05+ CCTGGTGCCCTATTGGAATTTTTAGACGCTTTCAGCCCACAATGGAATATAACTTTGTTC
____________________________________________________________
consensus CCTGGTGCCCTATTGGAATTTTTAGACGCTTTCAGCCCACAATGGAATATAACTTTGTTC
. : . : . : . : . : . :
rJMSF015K24+ AATTACCGTGCACATGGAGAAGCTGGTGCGAATGTGCTGGTGGGTCTTCAAGTTNCCAGC
rJMSF020I12+ AATTACCGTGCACATGGAGAAGCTGGTGCGAATGTGCTGGTGGGTCTTCAAGTTCCCAGC
rJMSF028O05+ AATTACCGTGCACATGGAGAAGCTGGTGCGAATGTGCTGGTGGGTCTTCAAGTTCCCAGC
____________________________________________________________
consensus AATTACCGTGCACATGGAGAAGCTGGTGCGAATGTGCTGGTGGGTCTTCAAGTTCCCAGC
. : . : . : . : . : . :
rJMSF015K24+ AACGAGATAGATGAGTTTAAGCAACGAGCCAACGATCTGGGCTACGAGTATGCTATAGAA
rJMSF020I12+ AACGAGATAGATGAGTTTAAGCAACGAGCCAACGATCTGGGCTACGAGTATGCTATAGAA
rJMSF028O05+ AACGAGATAGATGAGTTTAAGCAACGAGCCAACGATCTGGGCTACGAGTATGCTATAGAA
____________________________________________________________
consensus AACGAGATAGATGAGTTTAAGCAACGAGCCAACGATCTGGGCTACGAGTATGCTATAGAA
. : . : . : . : . : . :
rJMSF015K24+ ACCAGCGAGGCTTTCCAACTCTTGATGAATTAATTAAACAGGTCCATCATATCAGAGAGA
rJMSF020I12+ ACCAGCGAGGCTTTCCAACTCTTGATGAATTAATTAAACAGGTCCATCATATCAGAGAGA
rJMSF028O05+ ACCAGCGAGGCTTTCCAACTCTTGATGAATTAATTAAACAGGTCCATCATATCAGAGAGA
____________________________________________________________
consensus ACCAGCGAGGCTTTCCAACTCTTGATGAATTAATTAAACAGGTCCATCATATCAGAGAGA
. : . : . : . : . : . :
rJMSF015K24+ GTATCANTCATGCTTGGTGCAANAGTTTTATGGCATTTTACAATGCTATAGATTTCCCAA
rJMSF020I12+ GTATCACTCATGCTTGGTGCAAAAGTTTTATGGCATTTTACAATGCTATAGATTTCCCAA
rJMSF028O05+ GTATCACTCATGCTTGGTGCAAAAGTTTTATGGCATTTTACAATGCTATAGATTTCCCAA
____________________________________________________________
consensus GTATCACTCATGCTTGGTGCAAAAGTTTTATGGCATTTTACAATGCTATAGATTTCCCAA
. : . : . : . : . : . :
rJMSF015K24+ CTCCCAATAAACCCGTNTTCAGCANTACTATTAATANGGTTANGTAAAACCAATCTGTGC
rJMSF020I12+ CTCCCAATAAACCCGTTTTCAGCACTACTATTAATAAGGTTATGTAAAACCAAT-TGTGC
rJMSF028O05+ CTCCCAATAAACCCGTTTTCAGCACTACTATTAATAAGGTTATGTAAAACTAAT-TGTGC
____________________________________________________________
consensus CTCCCAATAAACCCGTTTTCAGCACTACTATTAATAAGGTTATGTAAAACCAAT-TGTGC
. : . : . : . : . : . :
rJMSF015K24+ AACGTTATGACTGTATTTCNTGATGTTTTCCGGTAGTCTGCATTTCACATTA
rJMSF020I12+ AACGTTATGACTGTATTTCTTGATGTTTTCTGGTAGTCTGCATTTCACATTA
rJMSF028O05+ AACGTTATGACTGTATTTCTTGATGTTTTCTGGTAGTCTGCATTTCACATTACTTCCCTT
____________________________________________________________
consensus AACGTTATGACTGTATTTCTTGATGTTTTCTGGTAGTCTGCATTTCACATTACTTCCCTT