Contig 005706:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF031B24+                                        TTATGCGGATGTTTCAGNTACTGATATTGC
                      ____________________________________________________________
consensus                                           TTATGCGGATGTTTCAGNTACTGATATTGC
 
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rJMSF031B24+          TTGTGCAGCTCTTAATGGGATTAAGATGGGTGATAAAACTCTTACTGTTAGACGTGCTAG
rJMSF028E07+                                     GGGTGATAAAACTCTTACTGTTAGACGTGCTAG
                      ____________________________________________________________
consensus             TTGTGCAGCTCTTAATGGGATTAAGATGGGTGATAAAACTCTTACTGTTAGACGTGCTAG
 
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rJMSF031B24+          CCAAGGTTCATTACAGCCTAAACCAGAACAGGAGAGTGTACTATTACATGCACAACAGCA
rJMSF028E07+          CCAAGGTTCATTACAGCCTAAACCAGAACAGGAGAGTGTACTATTACATGCACAACAGCA
                      ____________________________________________________________
consensus             CCAAGGTTCATTACAGCCTAAACCAGAACAGGAGAGTGTACTATTACATGCACAACAGCA
 
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rJMSF031B24+          AATAGCATTTCAGAGGCTCATGTTTCAACCTGGTGGGTTACCCACAAAGGTATTATGCCT
rJMSF028E07+          AATAGCATTTCAGAGGCTCATGTTTCAACCTGGTGGGTTACCCACAAAGGTATTATGCCT
                      ____________________________________________________________
consensus             AATAGCATTTCAGAGGCTCATGTTTCAACCTGGTGGGTTACCCACAAAGGTATTATGCCT
 
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rJMSF031B24+          AACAAATGTGGTTAGTGAGGATGAGCTTAGGGGTGATGAAGACTATGAGGATATATTGGA
rJMSF028E07+          AACAAATGTGGTTAGTGAGGATGAGCTTAGGGGTGATGAAGACTATGAGGATATATTGGA
                      ____________________________________________________________
consensus             AACAAATGTGGTTAGTGAGGATGAGCTTAGGGGTGATGAAGACTATGAGGATATATTGGA
 
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rJMSF031B24+          AGATATGAGAACTGAATGTGGGAAATTTGGTACTTTAGTGAATATTGTAATCCCTCGCCC
rJMSF028E07+          AGATATGAGAACTGAATGTGGGAAATTTGGTACTTTAGTGAATATTGTAATCCCTCGCCC
                      ____________________________________________________________
consensus             AGATATGAGAACTGAATGTGGGAAATTTGGTACTTTAGTGAATATTGTAATCCCTCGCCC
 
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rJMSF031B24+          ACGGCCCGATGGTGAACCTACACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCAGATAT
rJMSF028E07+          ACGGCCCGATGGTGAACCTACACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCAGATAT
                      ____________________________________________________________
consensus             ACGGCCCGATGGTGAACCTACACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCAGATAT
 
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rJMSF031B24+          TGAAGGTTCTACTACAGCTCAGCAAAAATTGAATGGAAGAAAATTTGGTGGAAATGAAGT
rJMSF028E07+          TGAAGGTTCTACTACAGCTCAGCAAAAATTGAATGGAAGAAAATTTGGTGGAAATGAAGT
                      ____________________________________________________________
consensus             TGAAGGTTCTACTACAGCTCAGCAAAAATTGAATGGAAGAAAATTTGGTGGAAATGAAGT
 
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rJMSF031B24+          GGTTGCAGTGTTCTACCCGGAGAACAAGTTCTCTGAGGGGGAGTACGAAGTCTAATCTTA
rJMSF028E07+          GGTTGCAGTGTTCTACCCGGAGAACAAGTTCTCTGAGGGGGAGTACGAAGTCTAATCTTA
                      ____________________________________________________________
consensus             GGTTGCAGTGTTCTACCCGGAGAACAAGTTCTCTGAGGGGGAGTACGAAGTCTAATCTTA
 
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rJMSF031B24+          TCAACTTCACCTACTACACACTTTCTCTTTCAGCTGCCTCCCACGACGGCTCATATATAG
rJMSF028E07+          TCAACTTCACCTACTACACACTTTCTCTTTCAGCTGCCTCCCACGACGGCTCATATATAG
                      ____________________________________________________________
consensus             TCAACTTCACCTACTACACACTTTCTCTTTCAGCTGCCTCCCACGACGGCTCATATATAG
 
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rJMSF031B24+          TTGGGTGAAGGATGGATTATTAATTAAGTTTGTTTGGCATGTTGAGTAGAAGTGCAGAAG
rJMSF028E07+          TTGGGTGAAGGATGGATTATTAATTAAGTTTGTTTGGCATGTTGAGTAGAAGTGCAGAAG
                      ____________________________________________________________
consensus             TTGGGTGAAGGATGGATTATTAATTAAGTTTGTTTGGCATGTTGAGTAGAAGTGCAGAAG
 
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rJMSF031B24+          AATCTAATCTTGTTTGCAGTGTTAGATTGTTGTAAACTTGTAATGTTGGATTTTGCAGTG
rJMSF028E07+          AATCTAATCTTGTTTGCAGTGTTAGATTGTTGTAAACTTGTAATGTTGGATTTTGCAGTG
                      ____________________________________________________________
consensus             AATCTAATCTTGTTTGCAGTGTTAGATTGTTGTAAACTTGTAATGTTGGATTTTGCAGTG
 
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rJMSF031B24+          TAAAATTGTAGGCAGGCCAGCTTGTTAGTTAGTAC                         
rJMSF028E07+          TAAAATTGTAGGCAGGCCAGCTTGTTAGTTAGTACTTAATAACTAGAATTTTCAAGTTGT
                      ____________________________________________________________
consensus             TAAAATTGTAGGCAGGCCAGCTTGTTAGTTAGTACTTAATAACTAGAATTTTCAAGTTGT
 
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rJMSF028E07+          GGATTAGAAATTGGTGTTGATAGTATGTGTGCTAAATAAGCAGCCATAACAACTGACCCC
                      ____________________________________________________________
consensus             GGATTAGAAATTGGTGTTGATAGTATGTGTGCTAAATAAGCAGCCATAACAACTGACCCC