Contig 005705:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028C11Sequence633001880 (4)ref|XP_004231753.1|2e-73PREDICTED: uncharacterized protein At2g33490 isoform X2 [Solanum lycopersicum]725005705 (2)ref|XP_006338724.1|1e-14PREDICTED: uncharacterized protein At2g33490-like [Solanum tuberosum]
JMSF033O23Sequence712001880 (4)ref|XP_004231753.1|2e-102PREDICTED: uncharacterized protein At2g33490 isoform X2 [Solanum lycopersicum]608005705 (2)ref|XP_006338724.1|4e-29PREDICTED: uncharacterized protein At2g33490-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+                                          ATAAGTGAGCTTCATGAGCTCCCTCGCC
                      ____________________________________________________________
consensus                                             ATAAGTGAGCTTCATGAGCTCCCTCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          CCCNTGGCTCTTTAGCTTCCAAGCCAGGANCTACTGCTCTGATTGGACACTCTGTCCCCT
                      ____________________________________________________________
consensus             CCCNTGGCTCTTTAGCTTCCAAGCCAGGANCTACTGCTCTGATTGGACACTCTGTCCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          TGGTTGATCGGAATCAAGAAGTGTCTCCATCAAATCGTAGCCCTTTGCAGGTATCAAATT
rJMSF028C11+                 TCGGAATCAAGAAGTGTCTCCATCAAATCGTAGCCCTTTGCAGGTATCAAATT
                      ____________________________________________________________
consensus             TGGTTGATCGGAATCAAGAAGTGTCTCCATCAAATCGTAGCCCTTTGCAGGTATCAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          CAGGTTCTGCACTCCCACCTCCACCACTAACGGTTCCTCGTAGTTTCTCCATACCCTCCA
rJMSF028C11+          CAGGTTCTGCACTCCCACCTCCACCACTAACGGTTCCTCGTAGTTTCTCCATACCCTCCA
                      ____________________________________________________________
consensus             CAGGTTCTGCACTCCCACCTCCACCACTAACGGTTCCTCGTAGTTTCTCCATACCCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          GCAATCAGAGGGCAATGGCATTACATGTGTCCAAACTGTTGGAATCTCCTCAAATGAAAG
rJMSF028C11+          GCAATCAGAGGGCAATGGCATTACATGTGTCCAAACTGTTGGAATCTCCTCAAATGAAAG
                      ____________________________________________________________
consensus             GCAATCAGAGGGCAATGGCATTACATGTGTCCAAACTGTTGGAATCTCCTCAAATGAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          ACAATGCTGAAATTGTATCATCTCCTCCACTATCACCTCTTTCTCTATCAAACCTATCAA
rJMSF028C11+          ACAATGCTGAAATTGTATCATCTCCTCCACTATCACCTCTTTCTCTATCAAACCTATCAA
                      ____________________________________________________________
consensus             ACAATGCTGAAATTGTATCATCTCCTCCACTATCACCTCTTTCTCTATCAAACCTATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          CTCTTTCAGGAGTAGCTTCCAGTTCTGGACAGATTAGAGGTGGGAGGTGATTCTGGCAGT
rJMSF028C11+          CTCTTTCAGGAGTAGCTTCCAGTTCTGGACAGATTAGAGGTGGGAGGTGATTCTGGCAGT
                      ____________________________________________________________
consensus             CTCTTTCAGGAGTAGCTTCCAGTTCTGGACAGATTAGAGGTGGGAGGTGATTCTGGCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          CAGCGTACGTCCTGGGTCCCCCTGAAGGGTTCAGACCTCCTGCGGTTCTTCACAGGCTAG
rJMSF028C11+          CAGCGTACGTCCTGGGTCCCCCTGAAGGGTTCAGACCTCCTGCGGTTCTTCACAGGCTAG
                      ____________________________________________________________
consensus             CAGCGTACGTCCTGGGTCCCCCTGAAGGGTTCAGACCTCCTGCGGTTCTTCACAGGCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          AGTCTGTTTACACTGAGGTTATATTGGTAAAGACCTGTAAATAGAATAATTGATTGATGT
rJMSF028C11+          AGTCTGTTTACACTGAGGTTATATTGGTAAAGACCTGTAAATAGAATAATTGATTGATGT
                      ____________________________________________________________
consensus             AGTCTGTTTACACTGAGGTTATATTGGTAAAGACCTGTAAATAGAATAATTGATTGATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          AATTGTTGGAATTTTTCCGCAATGATTTCCACCAAGTATTATCCTTGCAACAAACAGTTT
rJMSF028C11+          AATTGTTGGAATTTTTCCGCAATGATTTCCACCAAGTATTATCCTTGCAACAAACAGTTT
                      ____________________________________________________________
consensus             AATTGTTGGAATTTTTCCGCAATGATTTCCACCAAGTATTATCCTTGCAACAAACAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033O23+          TGACCGTTGGTGTAGTTAAAAA                                      
rJMSF028C11+          TGACCGTTGGTGTAGTTTAAAAAGAATTGAGCATCAAAGGGGTGTGTGTGTGATCATACT
                      ____________________________________________________________
consensus             TGACCGTTGGTGTAGTTTAAAAAGAATTGAGCATCAAAGGGGTGTGTGTGTGATCATACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028C11+          CTGTCTGATGCAACTCTAATCTGCTCCAGTTGGTAAAATATGGACCCTGTATCCAATGGC
                      ____________________________________________________________
consensus             CTGTCTGATGCAACTCTAATCTGCTCCAGTTGGTAAAATATGGACCCTGTATCCAATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028C11+          TCGCAAATTCAGTTACCCAACCCATTTCTGTGTCTGGCGAGCATGTATTTGGTTGGGGGA
                      ____________________________________________________________
consensus             TCGCAAATTCAGTTACCCAACCCATTTCTGTGTCTGGCGAGCATGTATTTGGTTGGGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF028C11+          TCAGGATCAGGATCAGGCAGGAGTTTTGTTTGTGGATTTGGTGAAATGGATGGATGTCAT
                      ____________________________________________________________
consensus             TCAGGATCAGGATCAGGCAGGAGTTTTGTTTGTGGATTTGGTGAAATGGATGGATGTCAT