Contig 005703:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010E11Sequence358002274 (4)730005703 (5)ref|XP_011099269.1|3e-15PREDICTED: BEL1-like homeodomain protein 4 [Sesamum indicum]
JMSF024L07Sequence627002274 (4)647005703 (5)ref|XP_011099269.1|5e-20PREDICTED: BEL1-like homeodomain protein 4 [Sesamum indicum]
JMSF027D23Sequence637002274 (4)244005703 (5)
JMSF033J05Sequence663002274 (4)679005703 (5)ref|XP_011099269.1|2e-06PREDICTED: BEL1-like homeodomain protein 4 [Sesamum indicum]
JMSF038L15Sequence181016837594005703 (5)

Alignment

This contig is upended


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rJMSF024L07+                                                            GTCTCGGCAG
                      ____________________________________________________________
consensus                                                               GTCTCGGCAG
 
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rJMSF024L07+          ACTGGTTTATNCAAGAATCAGGTTTCGAATTGGTTCATTAATGCTAGGGTTAGGTTGTGG
rJMSF010E11+                       AGAATCAGGTTTCGAATTGGTTCATTAATGCTAGGGTTAGGTTGTGG
                      ____________________________________________________________
consensus             ACTGGTTTATNCAAGAATCAGGTTTCGAATTGGTTCATTAATGCTAGGGTTAGGTTGTGG
 
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rJMSF024L07+          AAGCCGATGGTGGAGGAGATGTACCAGCAAGAATCCAAGGAGGAAGAGGCGGGGGAGCAA
rJMSF010E11+          AAGCCGATGGTGGAGGAGATGTACCAGCAAGAATCCAAGGAGGAAGAGGCGGAGGAGCAA
rJMSF033J05+                                               AGGAGGAAGAGGCNGAGGAGCAA
                      ____________________________________________________________
consensus             AAGCCGATGGTGGAGGAGATGTACCAGCAAGAATCCAAGGAGGAAGAGGCGGAGGAGCAA
 
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rJMSF024L07+          GAAAACGCCGCGGCACAGTNCCCAACGCCTGATGACAGTGGCAATAAGGGCATCACTGCC
rJMSF038L15+                                        GATGACAGTGGCAATAAGGGCATCACTGCC
rJMSF010E11+          GAAAACGCCGCGGCACAGTCCCCAACGCCTGATGACAGTGGCAATAAGGGCATCACTGCC
rJMSF033J05+          GAAAACGCCGCGGCACAGTCCCCAACGCCTGATGACAGTGGCAATAAGGGCATCACTGCC
                      ____________________________________________________________
consensus             GAAAACGCCGCGGCACAGTCCCCAACGCCTGATGACAGTGGCAATAAGGGCATCACTGCC
 
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rJMSF024L07+          ACCGCGACAACGACAACCNCAACAATGCCGTCGCCAGGGGGCAGAAGATCCGAATTTATT
rJMSF038L15+          ACCGCGACAACGNCAACCACAACAATGCCGTNGCCAGGGGGCAGAAGATCCGAATTTATT
rJMSF010E11+          ACCGCGACAACGACAACCACAACAATGCCGTCGCCAGGGGGCAGAAGATCCGAATTTATT
rJMSF033J05+          ACCGCGACAACGACAACCACAACAATGCCGTNGCCAGGGGGCAGAAGATCCGAATTTATT
                      ____________________________________________________________
consensus             ACCGCGACAACGACAACCACAACAATGCCGTCGCCAGGGGGCAGAAGATCCGAATTTATT
 
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rJMSF024L07+          NCGACGGAAAACGACCCCTCACGGAGNTATGCCATCGTCAATTATTCGTCATCATCATCC
rJMSF038L15+          GCGACGGAAAACGACCCCTCNCGGAGNTATGCCATNGTCAATTATTGGTCATCATCATCC
rJMSF010E11+          GCGACGGAAAACGACCCCTCACGGAGCTATGCCATCGTCAATTATTNGTCATCATCATCC
rJMSF033J05+          GCGACGGAAAACGACCCCTCACGGAGNTATGCCATCGTCAATTATTCGTCATCATCATCC
                      ____________________________________________________________
consensus             GCGACGGAAAACGACCCCTCACGGAGCTATGCCATCGTCAATTATTCGTCATCATCATCC
 
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rJMSF024L07+          TCCAGGCCTCATCAGCACCACCACCAGTACGCCTNGACCACCGTGCCGCATTTTCCGGAC
rJMSF038L15+          TCCNGGCCTCATCAGCACCNCCACCAGTACGCCTNGACCNCCGNGCCGCNTTTTCCGGNC
rJMSF010E11+          TCCAGGCCTCATCAGCACCACCACCAGTACGCCTNGACCACCGTGCCGCATTTTCCGGAC
rJMSF033J05+          TCCAGGCCTCATCAGCACCACCACCAGTACGCCTNGACCNCCGTGCCGCATTTTCCGGAC
                      ____________________________________________________________
consensus             TCCAGGCCTCATCAGCACCACCACCAGTACGCCTNGACCACCGTGCCGCATTTTCCGGAC
 
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rJMSF024L07+          ACCGCCTNCGCCACCTCCCCGCGCTGGGAGCCCCCCGGGATGCACGGCTGGGGGATGGTG
rJMSF038L15+          ACCGCCTNCGCCNCCTCCCCGNGNTGGGAGCCCCCCGGGATGCNCGGCTGGGGGATGGTG
rJMSF010E11+          ACCGCCTNCGCCACCTCCCCGCGCTGGGAGCCCCCCGGGATGCNCGGCTGGGGGATGGTG
rJMSF033J05+          ACCGCCTCCGCCACCTNCCCGCGCTGGGAGCCCCCCGGGATGCNCGGCTGGGGGATGGTG
                      ____________________________________________________________
consensus             ACCGCCTCCGCCACCTCCCCGCGCTGGGAGCCCCCCGGGATGCACGGCTGGGGGATGGTG
 
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rJMSF024L07+          GTGGACGGCGACGTTAGGCTCGGGGCGGCGGCGCAGTCCACCGGAGACGTGTCCCTCACT
rJMSF038L15+          GTGGACGGCGNCGTTAGGCTCGGGGNGGCGGNGCAGTCCNCCGGAGACGTGTCCCTCACT
rJMSF010E11+          GTGGACGGCGACGTTAGGCTCGGGGCGGCGGCGCAGTCCNCCGGAGACGTGTCCCTCACT
rJMSF033J05+          GTGGACGGCGACGTTAGGCTCGGGGCGGCGGCGCAGTCCNCCGGAGACGTGTCCCTCACT
                      ____________________________________________________________
consensus             GTGGACGGCGACGTTAGGCTCGGGGCGGCGGCGCAGTCCACCGGAGACGTGTCCCTCACT
 
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rJMSF024L07+          TTGGGACTCCGGCACTCCGAAAATGTGCCCAGGAATACCAGGCTNTCCATCAGAGACTTT
rJMSF038L15+          TTGGGANTCCGGCANTNCGAAAATGTNCCCNGGAATACCNGGCTNTCCATCAGAGACTTT
rJMSF010E11+          TTGGGACTCCGGCACTCCGAAAATGTGCCCAGGAATACCNGGCTNTCCATCAGAGACTTT
rJMSF033J05+          TTGGGACTCCGGCACTCCGAAAATGTGCCCAGGAATACCNGGCTNTCCATCAGAGACTTT
rJMSF027D23+                                                                 ACTTT
                      ____________________________________________________________
consensus             TTGGGACTCCGGCACTCCGAAAATGTGCCCAGGAATACCAGGCTNTCCATCAGAGACTTT
 
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rJMSF024L07+          GGAGCCTTTTGAATTTGNTGGTGTGATATGATGATCATTAAATTAAAACACATATCATAT
rJMSF038L15+          GGAGCCTTTTGAATTTGCTGGTGTGATATGATGATCNTTAAATTAAAACNCATNTCATAT
rJMSF010E11+          GGAGCCTTTTGAATTTGCTGGTGTGATATGATGATCNTTAAATTAAAACNCATATCATAT
rJMSF033J05+          GGAGCCTTTTGAATTTGCTGGTGTGATATGATGATCNTTAAATTAAAACNCATATCATAT
rJMSF027D23+          GGAGCCTTTTGAATTTGNTGGNGNGATATGATGATCNTTAAATTAAAACNCNTATCATAT
                      ____________________________________________________________
consensus             GGAGCCTTTTGAATTTGCTGGTGTGATATGATGATCATTAAATTAAAACACATATCATAT
 
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rJMSF024L07+          ACTTTAAAAGTATGATGACAATGGTGATGTTAGCCTA                       
rJMSF038L15+          ACTTTAAAAGTATGATGACAATGGTGATGTTAGCCTATTGGAGTTGGTATTAATTGTAAA
rJMSF010E11+          ACTTTAAAAGTATGATGACAATGGTGATGTTAGCCTATTGGAGTTGGTATTAATTGTAAA
rJMSF033J05+          ACTTTAAAAGTATGATGACAATGGNGATGTTAGCCTATTGGAGTTGGTATTAATTGTAAA
rJMSF027D23+          ACTTTAAAAGTATGATGACAATGGNGATGTTAGCCTATTGGAGTTGGTATTAATTGNAAA
                      ____________________________________________________________
consensus             ACTTTAAAAGTATGATGACAATGGTGATGTTAGCCTATTGGAGTTGGTATTAATTGTAAA
 
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rJMSF038L15+          AAAAAAACAACACAAATGAGAATTGTATTCTTATCTTATTTGGTTTGTTTTTCTTTTGGT
rJMSF010E11+          AAAAAAACAACACAAATGAGAATTGTATTCTTA-CTTATTTGGTTTGTTTTTCTTTTGGT
rJMSF033J05+          AAAAAAACAACACAAATGAGAATTGTATTCTTA-CTTATTTGGTTTGTTTTTCTTTTGGT
rJMSF027D23+          AAAAAAACAACNCAAATGAGAATTGTATTCTTA-CTTATTTGGTTTGTTTTTCTTTTGGT
                      ____________________________________________________________
consensus             AAAAAAACAACACAAATGAGAATTGTATTCTTA-CTTATTTGGTTTGTTTTTCTTTTGGT
 
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rJMSF038L15+          GTGGTGGTTACATATTTTAGGGCT                                    
rJMSF010E11+          GTGGTGGTTACATATTTTAGGGCT                                    
rJMSF033J05+          GTGGTGGTTACATATTTTAGGGCTTGTA-TTTTTTTTTATATAAAAAAGTCAAATGAA  
rJMSF027D23+          GTGGNGGTTACATATTTTAGGGCTTGTATTTTTTTTTTATATAAAAAAGTCAAATGAATA
                      ____________________________________________________________
consensus             GTGGTGGTTACATATTTTAGGGCTTGTATTTTTTTTTTATATAAAAAAGTCAAATGAATA