Contig 005702:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027A21Sequence673013392 (2)gb|KDP24339.1|4e-17hypothetical protein JCGZ_25635 [Jatropha curcas]422005702 (2)emb|CDP00518.1|4e-04unnamed protein product [Coffea canephora]
JMSF049M09Sequence682015866364005702 (2)emb|CDP00518.1|5e-04unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF027A21+                                                                    AN
                      ____________________________________________________________
consensus                                                                       AN
 
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rJMSF049M09+                                        GGGGNTTTTTTTTTTTTGAAGTTTTATGCA
rJMSF027A21+          GGTTNNCCNGGGNNAAANGNGNAATGGNTGGGGGNTTTTTTTTTTTTGAAGTTTTATGCA
                      ____________________________________________________________
consensus             GGTTNNCCNGGGNNAAANGNGNAATGGNTGGGGGNTTTTTTTTTTTTGAAGTTTTATGCA
 
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rJMSF049M09+          GAAATCTCTAGATCTATACTTTGGGAGGAACTTCAAAGTGCAGCTAAAGTGCTTAAAATG
rJMSF027A21+          GAAATCTCTAGATCTATACTTTGGGAGGAACTTCAAAGTGCAGCTAAAGTGCTTAAAATG
                      ____________________________________________________________
consensus             GAAATCTCTAGATCTATACTTTGGGAGGAACTTCAAAGTGCAGCTAAAGTGCTTAAAATG
 
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rJMSF049M09+          CTTCACACTTTTAAGCTTAGATCATTCAATGGGTCAAGGTTTGAATTGCAATTCATCGAG
rJMSF027A21+          CTTCACACTTTTAAGCTTAGATCATTCAATGGGTCAAGGTTTGAATTGCAATTCATCGAG
                      ____________________________________________________________
consensus             CTTCACACTTTTAAGCTTAGATCATTCAATGGGTCAAGGTTTGAATTGCAATTCATCGAG
 
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rJMSF049M09+          GTGCTACTTGCTTGCTTTCCCGCACTTGAAAAGGTTGTCATTATTCGCCAGATGGAGTTT
rJMSF027A21+          GTGCTACTTGCTTGCTTTCCCGCACTTGAAAAGGTTGTCATTATTCGCCAGATGGAGTTT
                      ____________________________________________________________
consensus             GTGCTACTTGCTTGCTTTCCCGCACTTGAAAAGGTTGTCATTATTCGCCAGATGGAGTTT
 
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rJMSF049M09+          GATTCCAATGAGGAGTTTAAAATCATGCAAAAGTTTTTTCATTTTCTCCTCGTGCATCAA
rJMSF027A21+          GATTCCAATGAGGAGTTTAAAATCATGCAAAAGTTTTTTCATTTTCTCCTCGTGCATCAA
                      ____________________________________________________________
consensus             GATTCCAATGAGGAGTTTAAAATCATGCAAAAGTTTTTTCATTTTCTCCTCGTGCATCAA
 
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rJMSF049M09+          AGAAAGCAAAAATTGTTTACATATAAGCATCTTATTATATTTTTGTTGAATTAATATATG
rJMSF027A21+          AGAAAGCAAAAATTGTTTACATATAAGCATCTTATTATATTTTTGTTGAATTAATATATG
                      ____________________________________________________________
consensus             AGAAAGCAAAAATTGTTTACATATAAGCATCTTATTATATTTTTGTTGAATTAATATATG
 
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rJMSF049M09+          CATCTCCTTGATTCACTCTTTGAGTTCAATATTT                          
rJMSF027A21+          CATCTCCTTGATTCACTCTTTGAGTTCAATATTTTGTAATGTACCTAATGGTAACCTCGA
                      ____________________________________________________________
consensus             CATCTCCTTGATTCACTCTTTGAGTTCAATATTTTGTAATGTACCTAATGGTAACCTCGA