Contig 005701:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014P22Sequence338005701 (3)ref|XP_006356360.1|183PREDICTED: uncharacterized protein LOC102590911 [Solanum tuberosum]792005701 (3)ref|XP_009624918.1|6e-75PREDICTED: uncharacterized protein LOC104115903 isoform X1 [Nicotiana tomentosi
JMSF026P24Sequence672013322 (17)ref|XP_010087805.1|4e-120Mitochondrial outer membrane protein porin of 34 kDa [Morus notabilis] gb|EXB301674005701 (3)ref|XP_010248257.1|100PREDICTED: uncharacterized protein LOC104591167 [Nelumbo nucifera]

Alignment

This contig is upended


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JMSF014P22-                   GGTTCTTTCGCCTTGATTACTAGAGGTTATGGCCACAGCTGCGGAGATCGGT
                      ____________________________________________________________
consensus                     GGTTCTTTCGCCTTGATTACTAGAGGTTATGGCCACAGCTGCGGAGATCGGT
 
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JMSF014P22-           GTTCCACAACTCGTCAACCAAATCCAAGATCTCTCAATCCCGGATCAGAGTAAAATGAAG
                      ____________________________________________________________
consensus             GTTCCACAACTCGTCAACCAAATCCAAGATCTCTCAATCCCGGATCAGAGTAAAATGAAG
 
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JMSF014P22-           AGCACTGCTGAGGAGGTTCTCCGTGTTGGGTGTGAGAATGATCATCATGGGTTGTGTGCG
rJMSF014P22+                                            AGAATGATCATCATGGGTTGTGTGCG
                      ____________________________________________________________
consensus             AGCACTGCTGAGGAGGTTCTCCGTGTTGGGTGTGAGAATGATCATCATGGGTTGTGTGCG
 
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JMSF014P22-           ATTTGCTTGAATAAGATAGTGCTGCAAGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCC
rJMSF014P22+          ATTTGCNTGAATAAGATAGTGCTGCAAGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCC
                      ____________________________________________________________
consensus             ATTTGCTTGAATAAGATAGTGCTGCAAGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCC
 
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JMSF014P22-           TACTGTGTGACTTGCATCCTACGTTGGGCGACCTACAAGAAGGAACCTACCTGCCCTCAG
rJMSF014P22+          TACTGTGTGACTTGCATCCTACGTTGGGCGACCTACAAGAAGGAACCTACCTGCCCTCAG
                      ____________________________________________________________
consensus             TACTGTGTGACTTGCATCCTACGTTGGGCGACCTACAAGAAGGAACCTACCTGCCCTCAG
 
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JMSF014P22-           TGCAAGCATCCATTTGAGTTTCTAAACATCCACCGTGCTCTTGATG              
rJMSF014P22+          TGCAAGCATCCATTTGAGTTTCTAAACATCCACCGTGCTCTTGATGGAAGCATCTATGAT
rJMSF026P24+                                                       GGAAGCATCTATGAT
                      ____________________________________________________________
consensus             TGCAAGCATCCATTTGAGTTTCTAAACATCCACCGTGCTCTTGATGGAAGCATCTATGAT
 
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rJMSF014P22+          TACATGTTTGAGGAGAGTGTTTGCCTTCTTTTGAGAGCATCGTGGTTTCAGCCTTTAGTA
rJMSF026P24+          TACATGTTTGAGGAGAGTGTTTGCCTTCTTTTGAGAGCATCGTGGTTTCAGCCTTTAGTA
                      ____________________________________________________________
consensus             TACATGTTTGAGGAGAGTGTTTGCCTTCTTTTGAGAGCATCGTGGTTTCAGCCTTTAGTA
 
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rJMSF014P22+          GTAGTGGAGGAACAACCAGAGGTTGATGATTATGTGGACGACTTCTACCTATATGATGGA
rJMSF026P24+          GTAGTGGAGGAACAACCAGAGGTTGATGATTATGTGGACGACTTCTACCTATATGATGGA
                      ____________________________________________________________
consensus             GTAGTGGAGGAACAACCAGAGGTTGATGATTATGTGGACGACTTCTACCTATATGATGGA
 
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rJMSF014P22+          TTTGAAGATGAAGAAGATGATCTCGATGAAGCTTATTTTGACAGTTCATCTAGCATTCGC
rJMSF026P24+          TTTGAAGATGAAGAAGATGATCTCGATGAAGCTTATTTTGACAGTTCATCTAGCATTCGC
                      ____________________________________________________________
consensus             TTTGAAGATGAAGAAGATGATCTCGATGAAGCTTATTTTGACAGTTCATCTAGCATTCGC
 
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rJMSF014P22+          TTAGGCAACAGGAGATGGGGAGATAATGGATATGTTAGGGCAGGTAGGCAAGAAGCTAGA
rJMSF026P24+          TTAGGCAACAGGAGATGGGGAGATAATGGATATGTTAGGGCAGGTAGGCAAGAAGCTAGA
                      ____________________________________________________________
consensus             TTAGGCAACAGGAGATGGGGAGATAATGGATATGTTAGGGCAGGTAGGCAAGAAGCTAGA
 
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rJMSF014P22+          CCTGTCAACCGACCAAATTTCGAGGACTCGGATGCTGGCCCATCACGCCAGCCCAAGAAA
rJMSF026P24+          CCTGTCAACCGACCAAATTTCGAGGACTCGGATGCTGGCCCATCACGCCAGCCCAA-AAA
                      ____________________________________________________________
consensus             CCTGTCAACCGACCAAATTTCGAGGACTCGGATGCTGGCCCATCACGCCAGCCCAAGAAA
 
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rJMSF014P22+          AAGGAGCCCTCCAAGGAGATCATGGGTAGGCGGGCAAAAAGGGCCATGAAGCGGGAAGCT
rJMSF026P24+          AAGGAGCCCTCCAAGGAGATCATGGGTAGGCGGGCAAAAAGGGCCATGAAGCGGGAAGCT
                      ____________________________________________________________
consensus             AAGGAGCCCTCCAAGGAGATCATGGGTAGGCGGGCAAAAAGGGCCATGAAGCGGGAAGCT
 
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rJMSF014P22+          GCCAACAACGCAGCTGCTGCAAAGCATCAGCAACACTTGGCGAGGTTGGGCCGCAAATGA
rJMSF026P24+          GCCAACAACGCAGCTGCTGCAAAGCATCAGCAACACTTGGCGAGGTTGGGCCGCAAATGA
                      ____________________________________________________________
consensus             GCCAACAACGCAGCTGCTGCAAAGCATCAGCAACACTTGGCGAGGTTGGGCCGCAAATGA
 
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rJMSF014P22+          GGCCACCCACTCCAATGGAGTGCCAAGGGGGGGGCATTTCCACCTAGATGCTGAATTCAT
rJMSF026P24+          GGCCACCCACTCCAATGGAGTGCCAAGGGGGGGGCATTTCCACCTAGATGCTGAATTCAT
                      ____________________________________________________________
consensus             GGCCACCCACTCCAATGGAGTGCCAAGGGGGGGGCATTTCCACCTAGATGCTGAATTCAT
 
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rJMSF014P22+          GACCTTCATCCCTGTACAGAATTATCACAACTTTCAGTTTGTGAAATAATGACAGCATAG
rJMSF026P24+          GACCTTCATCCCTGTACAGAATTATCACAACTTTCAGTTTGTGAAATAATGACAGCATAG
                      ____________________________________________________________
consensus             GACCTTCATCCCTGTACAGAATTATCACAACTTTCAGTTTGTGAAATAATGACAGCATAG
 
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rJMSF014P22+          ATGTTTAGTGATGAACAAACAGGATGACACAGATCATCCCATGCTG              
rJMSF026P24+          ATGTTTAGTGATGAACAAACAGGATGACACAGATCATCCCATGCTGTACAATTTAATCTT
                      ____________________________________________________________
consensus             ATGTTTAGTGATGAACAAACAGGATGACACAGATCATCCCATGCTGTACAATTTAATCTT
 
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rJMSF026P24+          TGACTATGATGTTGCCTTAGTATTACTGTACATTTGTAGGAAAAATTATATTTTAGTCTC
                      ____________________________________________________________
consensus             TGACTATGATGTTGCCTTAGTATTACTGTACATTTGTAGGAAAAATTATATTTTAGTCTC