Contig 005696:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002K19Sequence548005696 (30)ref|XP_004241330.1|7e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]516005696 (30)ref|XP_004241330.1|8e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFF004N14Sequence533005696 (30)ref|XP_004241330.1|7e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]503005696 (30)ref|XP_004241330.1|6e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFF004P14Sequence229005696 (30)ref|XP_004241330.1|3e-43PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFF024K06Sequence432005696 (30)ref|XP_009587811.1|3e-68PREDICTED: photosystem I subunit O-like [Nicotiana tomentosiformis]495005696 (30)ref|XP_004241330.1|7e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFF035B04Sequence337005696 (30)ref|XP_009587811.1|3e-43PREDICTED: photosystem I subunit O-like [Nicotiana tomentosiformis]496005696 (30)ref|XP_004241330.1|6e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFF043H13Sequence623005696 (30)ref|XP_004241330.1|3e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFN004N05Sequence559005696 (30)ref|XP_004241330.1|2e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFN013E21Sequence564005696 (30)ref|XP_004241330.1|2e-71PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFN019L11Sequence573005696 (30)ref|XP_004241330.1|8e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFN043I18Sequence562005696 (30)ref|XP_004241330.1|2e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFN043O12Sequence598005696 (30)ref|XP_004241330.1|2e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFS034H10Sequence525005696 (30)ref|XP_004241330.1|6e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFS036F07Sequence355005696 (30)ref|XP_004241330.1|6e-52PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFS037F11Sequence525005696 (30)ref|XP_004241330.1|6e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMFS060C07Sequence502005696 (30)ref|XP_004241330.1|5e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMSF002C23Sequence425005696 (30)ref|XP_009587811.1|1e-47PREDICTED: photosystem I subunit O-like [Nicotiana tomentosiformis]
JMSF007L23Sequence383005696 (30)ref|XP_009587811.1|3e-55PREDICTED: photosystem I subunit O-like [Nicotiana tomentosiformis]495005696 (30)ref|XP_004241330.1|7e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMSF008O12Sequence277005696 (30)gb|KJB55588.1|1e-29hypothetical protein B456_009G083700 [Gossypium raimondii]482005696 (30)ref|XP_004241330.1|6e-75PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMSF025O20Sequence605005696 (30)ref|XP_004241330.1|6e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]544005696 (30)ref|XP_004241330.1|8e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMSF027E16Sequence560005696 (30)ref|XP_004241330.1|9e-73PREDICTED: photosystem I subunit O [Solanum lycopersicum]506005696 (30)ref|XP_004241330.1|9e-75PREDICTED: photosystem I subunit O [Solanum lycopersicum]
JMSF031O09Sequence535005696 (30)ref|XP_004241330.1|5e-72PREDICTED: photosystem I subunit O [Solanum lycopersicum]482005696 (30)ref|XP_004241330.1|5e-74PREDICTED: photosystem I subunit O [Solanum lycopersicum]

Alignment

This contig is upended


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JMFN004N05+                                                           AAAAAAAAACAG
JMFN019L11+                                                     AAAAAAAAAAAAAAACAG
JMFN013E21+                                                     AAAAAAAAAAAAAAACAG
JMFF043H13+                  CAAAAATGGAATTAACTCTAAATTAAATTAACCAAAAAAAAAAAAAAAAACAG
JMFN043I18+                                                                    CAG
JMFN043O12+                                                     AAAAAAAAAAAAAAACAG
                      ____________________________________________________________
consensus                    CAAAAATGGAATTAACTCTAAATTAAATTAACCAAAAAAAAAAAAAAAAACAG
 
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JMFN004N05+           AGTTAGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFN019L11+           AGTTAGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFN013E21+           AGTTAGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFS037F11+               AGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFS034H10+               AGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFS060C07+                                      GTACACAACCACATAGCAGACAGTGTTATTAAG
JMFS036F07+               AGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFF043H13+           AGTTAGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFN043I18+           AGTTAGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFN043O12+           AGTTAGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMSF027E16+                              TTTTTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
JMFF004N14+                              TTTTTTTTTTACACAACCACATAGCAGACAGTGTTATTAAG
JMSF031O09+                              TTTTTTTTGTACACAACCACATAG-AGACAGTGTTATTAAG
JMFF002K19+                              TTTTTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
rJMFF004N14-                                                           GTGTTATTAAG
rJMFF002K19-                                                           GTGTTATTAAG
rJMFF024K06-                                                                    AG
rJMSF007L23-                                                                    AG
rJMFF035B04-                                                                     G
JMSF025O20+                GGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
rJMSF025O20-                                                                  TAAG
                      ____________________________________________________________
consensus             AGTTAGGAAATTAAACAGAGAATTTTTGTACACAACCACATAGCAGACAGTGTTATTAAG
 
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JMFN004N05+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFN019L11+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFN013E21+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFS037F11+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFS034H10+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFS060C07+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFS036F07+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFF043H13+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFN043I18+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFN043O12+           GTATAACAACAATAGTAGAAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMSF027E16+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFF004N14+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMSF031O09+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFF002K19+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMFF004N14-          GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMFF004P14+                                                                    CCC
rJMFF002K19-          GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMFF024K06-          GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMSF007L23-          GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMSF008O12-                     ATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMFF035B04-          GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMSF031O09-                     ATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
JMSF025O20+           GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMSF027E16-                     ATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
rJMSF025O20-          GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
                      ____________________________________________________________
consensus             GTATAACAACAATAGTAGGAACAATATATATAACATTAAAAGTAATCCTCAGTCCTTCCC
 
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JMFN004N05+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFN019L11+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFN013E21+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFS037F11+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFS034H10+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFS060C07+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFS036F07+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFF043H13+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFN043I18+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFN043O12+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMSF027E16+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFF004N14+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMSF031O09+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFF002K19+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMFF004N14-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFF004P14+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMFF002K19-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMFF024K06-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMSF007L23-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMSF008O12-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMFF035B04-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMSF031O09-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMFF024K06+            TGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMSF007L23+                                                             GCATACCAGC
JMSF025O20+           TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
rJMSF027E16-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
JMSF002C23+                                                         GCCAGCATACCAGC
rJMSF025O20-          TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
                      ____________________________________________________________
consensus             TTGAAGCCAATCTGTCCAAAAGTGAGACACAGGAACAACCCCAAATGCCAGCATACCAGC
 
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JMFN004N05+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFN019L11+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFN013E21+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFS037F11+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFS034H10+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFS060C07+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFS036F07+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFF043H13+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFN043I18+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFN043O12+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMSF027E16+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFF004N14+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMSF031O09+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFF002K19+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMFF004N14-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFF004P14+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMFF002K19-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMFF024K06-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMSF007L23-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMSF008O12-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMFF035B04-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMSF031O09-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFF024K06+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMSF007L23+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMFF035B04+                                                 CCAGTGAGAAAGCTCAGTGCCA
JMSF025O20+           CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMSF027E16-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
JMSF002C23+           CACAGCCAGAA-TGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
rJMSF025O20-          CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
                      ____________________________________________________________
consensus             CACAGCCAGAATTGAGAAGTGAGGGCAGGTCCAGTGGGCCAGTGAGAAAGCTCAGTGCCA
 
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JMFN004N05+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFN019L11+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFN013E21+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFS037F11+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFS034H10+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFS060C07+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFS036F07+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFF043H13+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFN043I18+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFN043O12+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMSF027E16+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFF004N14+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMSF031O09+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFF002K19+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMFF004N14-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFF004P14+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMFF002K19-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMFF024K06-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMSF007L23-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMSF008O12+                                               TTGATGAGTGGAACGCTGGATGGT
rJMSF008O12-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMFF035B04-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMSF031O09-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFF024K06+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMSF007L23+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMFF035B04+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMSF025O20+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMSF027E16-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
JMSF002C23+           ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
rJMSF025O20-          ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
                      ____________________________________________________________
consensus             ATGCTGTCAAAGAAGAGTCCAGTCAAGCTCTTGCCATTGATGAGTGGAACGCTGGATGGT
 
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JMFN004N05+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFN019L11+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFN013E21+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFS037F11+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFS034H10+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFS060C07+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFS036F07+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCT 
JMFF043H13+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFN043I18+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFN043O12+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMSF027E16+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFF004N14+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMSF031O09+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFF002K19+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
rJMFF004N14-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFF004P14+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCC              
rJMFF002K19-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
rJMFF024K06-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
rJMSF007L23-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMSF008O12+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCNTCAGCCAGTCTCTC
rJMSF008O12-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
rJMFF035B04-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
rJMSF031O09-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFF024K06+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMSF007L23+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMFF035B04+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMSF025O20+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
rJMSF027E16-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
JMSF002C23+           GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
rJMSF025O20-          GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
                      ____________________________________________________________
consensus             GCAATCCATCCTATCAGCCCAAACCCTATCACATTCAGGTCCCTCCTCAGCCAGTCTCTC
 
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JMFN004N05+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFN019L11+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFN013E21+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFS037F11+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFS034H10+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFS060C07+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFF043H13+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFN043I18+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFN043O12+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMSF027E16+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFF004N14+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMSF031O09+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGCTCCTTGCTGAT
JMFF002K19+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMFF004N14-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMFF002K19-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMFF024K06-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMSF007L23-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMSF008O12+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMSF008O12-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMFF035B04-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMSF031O09-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGCTCCTTGCTGAT
JMFF024K06+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMSF007L23+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMFF035B04+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMSF025O20+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMSF027E16-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
JMSF002C23+           TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
rJMSF025O20-          TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
                      ____________________________________________________________
consensus             TCAAAGCATGTAAATTTGCCCATGCAAGCTCTTGGTAGCTTTAGAGGGTTCCTTGCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004N05+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFN019L11+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFN013E21+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFS037F11+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFS034H10+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFS060C07+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFF043H13+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFN043I18+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFN043O12+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMSF027E16+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFF004N14+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMSF031O09+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFF002K19+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMFF004N14-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMFF002K19-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMFF024K06-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMSF007L23-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMSF008O12+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMSF008O12-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMFF035B04-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMSF031O09-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFF024K06+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMSF007L23+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMFF035B04+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMSF025O20+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMSF027E16-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
JMSF002C23+           ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
rJMSF025O20-          ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
                      ____________________________________________________________
consensus             ACTGCTGGTTTCAAGAAGTCTGAGGTGAGAAAGAGTTTGTTTGGAGAAGAAAGTCTTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004N05+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFN019L11+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFN013E21+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGC          
JMFS037F11+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTG           
JMFS034H10+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTG           
JMFS060C07+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTG           
JMFF043H13+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFN043I18+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFN043O12+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMSF027E16+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFF004N14+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMSF031O09+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFF002K19+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMFF004N14-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMFF002K19-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMFF024K06-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMSF007L23-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMSF008O12+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMSF008O12-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMFF035B04-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMSF031O09-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFF024K06+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMSF007L23+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMFF035B04+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMSF025O20+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMSF027E16-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
JMSF002C23+           AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
rJMSF025O20-          AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
                      ____________________________________________________________
consensus             AGAGAGGAGGTAGCCAGGCCAACAACAGTTGATGCTGCACACAGTGTTGCTGCCATTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN004N05+           GGTCTCT                                                     
JMFN019L11+           G                                                           
JMFF043H13+           GGTCTCTGATCT                                                
JMFN043I18+           GGTCTCTGATCTGATCTTT                                         
JMFN043O12+           GGTCTCTGATCTGATCTTTGAAAGTGGGTGAAAAGAGAT                     
JMSF027E16+           GGTCTCTGATCTGATCTTTGAAAGTGGGTGAAAAGA                        
JMFF004N14+           GGTCTCTGATCT                                                
JMSF031O09+           GGTCTCTGATCTC                                               
JMFF002K19+           GGTCTCTGATCTGATCTTTGAAAGT                                   
rJMFF004N14-          GGTCTCTGATCT                                                
rJMFF002K19-          GGTCTCTGATCTGATCTTTGAAAGT                                   
rJMFF024K06-          GGTCTCTGATCTC                                               
rJMSF007L23-          GGTCTCTGATCTC                                               
JMSF008O12+           GGTCTCTGATCA                                                
rJMSF008O12-          GGTCTCTGATCA                                                
rJMFF035B04-          GGTCTCTGATCA                                                
rJMSF031O09-          GGTCTCTGATCTC                                               
JMFF024K06+           GGTCTCTGATCTC                                               
JMSF007L23+           GGTCTCTGATCTC                                               
JMFF035B04+           GGTCTCTGATCA                                                
JMSF025O20+           GGTCTCTGATCTGATCTTTGAAAGTGGGTGAAAAGAGATGAATATAGTGGTGAGATTTTT
rJMSF027E16-          GGTCTCTGATCTGATCTTTGAAAGTGGGTGAAAAGA                        
JMSF002C23+           GGTCTCTGATCTGATCTTTGAAAGTGGGTGAAAAGAGATGAATATAGTGGT         
rJMSF025O20-          GGTCTCTGATCTGATCTTTGAAAGTGGGTGAAAAGAGATGAATATAGTGGTGAGATTTTT
                      ____________________________________________________________
consensus             GGTCTCTGATCTGATCTTTGAAAGTGGGTGAAAAGAGATGAATATAGTGGTGAGATTTTT