Contig 005689:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010I24Sequence250008300 (5)ref|XP_004244048.1|9e-05PREDICTED: probable WRKY transcription factor 20 [Solanum lycopersicum]731005689 (4)ref|XP_009591629.1|1e-68PREDICTED: probable WRKY transcription factor 20 isoform X3 [Nicotiana tomentos
JMSF011O02Sequence317008300 (5)ref|XP_006346162.1|6e-20PREDICTED: probable WRKY transcription factor 20-like [Solanum tuberosum]705005689 (4)ref|XP_009591629.1|1e-52PREDICTED: probable WRKY transcription factor 20 isoform X3 [Nicotiana tomentos
JMSF019G14Sequence595008300 (5)ref|XP_006346162.1|9e-44PREDICTED: probable WRKY transcription factor 20-like [Solanum tuberosum]733005689 (4)ref|XP_009591629.1|2e-62PREDICTED: probable WRKY transcription factor 20 isoform X3 [Nicotiana tomentos
JMSF024E22Sequence641021062ref|XP_006346162.1|2e-48PREDICTED: probable WRKY transcription factor 20-like [Solanum tuberosum]707005689 (4)ref|XP_009591629.1|3e-36PREDICTED: probable WRKY transcription factor 20 isoform X3 [Nicotiana tomentos

Alignment

This contig is upended


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rJMSF010I24+                                                                 GCCTG
                      ____________________________________________________________
consensus                                                                    GCCTG
 
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rJMSF010I24+          CAGAAATTATTNATTTTANGATTCTCTTCATGCTATGAGTACCTTTATCGCATCATGTGA
                      ____________________________________________________________
consensus             CAGAAATTATTNATTTTANGATTCTCTTCATGCTATGAGTACCTTTATCGCATCATGTGA
 
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rJMSF010I24+          TTTTTTACACGATGTAGGAGCTATTACAAGTGCACAAATGCAGGGTGTTCAGTCAGAAAA
rJMSF019G14+                                                           CAGTCAGAAAA
                      ____________________________________________________________
consensus             TTTTTTACACGATGTAGGAGCTATTACAAGTGCACAAATGCAGGGTGTTCAGTCAGAAAA
 
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rJMSF010I24+          CACGTTGAAAGGGCTTCTCATGATCCCAAAGCTGTAATAACGACCTATGAGGGAAAACAC
rJMSF019G14+          CACGTTGAAAGGGCTTCTCATGATCCCAAAGCTGTAATAACGACCTATGAGGGAAAACAC
rJMSF011O02+                           TCATGATCCCAAAGCTGTAATAACGACCTATGAGGGAAAACAC
                      ____________________________________________________________
consensus             CACGTTGAAAGGGCTTCTCATGATCCCAAAGCTGTAATAACGACCTATGAGGGAAAACAC
 
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rJMSF010I24+          AATCATGATGTACCAACTGCCAGGACTAGTGCCAATCATGAAACAGGAGCAACACCTTTA
rJMSF019G14+          AATCATGATGTACCAACTGCCAGGACTAGTGCCAATCATGAAACAGGAGCAACACCTTTA
rJMSF011O02+          AATCATGATGTACCAACTGCCAGGACTAGTGCCAATCATGAAACAGGAGCAACACCTTTA
rJMSF024E22+                      CCAACTGCCAGGACTAGTGCCNATCATGAAACAGGAGCAACACCTTTA
                      ____________________________________________________________
consensus             AATCATGATGTACCAACTGCCAGGACTAGTGCCAATCATGAAACAGGAGCAACACCTTTA
 
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rJMSF010I24+          AGTGGAGTGTCAAGGGTCAGGCCAGAAGAGAACGATGCAATCAGCCTTGATCTAGGCGTC
rJMSF019G14+          AGTGGAGTGTCAAGGGTCAGGCCAGAAGAGAACGATGCAATCAGCCTTGATCTAGGCGTC
rJMSF011O02+          AGTGGAGTGTCAAGGGTCAGGCCAGAAGAGAACGATGCAATCAGCCTTGATCTAGGCGTC
rJMSF024E22+          AGTGGAGTGTCAAGGGTCAGGCCAGAAGAGAACGATGCAATCAGCCTTGATCTAGGCGTC
                      ____________________________________________________________
consensus             AGTGGAGTGTCAAGGGTCAGGCCAGAAGAGAACGATGCAATCAGCCTTGATCTAGGCGTC
 
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rJMSF010I24+          GGAATTGGCTACGGTACTGAGCACAGGCCTAATGGCCAACTCCATTCACTCGCCCCAGAA
rJMSF019G14+          GGAATTGGNTACGGTACTGAGCACAGGCCTAATGGCCAACTCCATTCACTCGCCCCAGAA
rJMSF011O02+          GGAATTGGCTACGGTACTGAGCACAGGCCTAATGGCCAACTCCATTCACTCGCCCCAGAA
rJMSF024E22+          GGAATTGGCTACGGTACTGAGCACAGGCCTAATGGCCAACTCCATTCACTCGCCCCAGAA
                      ____________________________________________________________
consensus             GGAATTGGCTACGGTACTGAGCACAGGCCTAATGGCCAACTCCATTCACTCGCCCCAGAA
 
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rJMSF010I24+          ACCCTCCAAGGTCAGGTTCATGTTTCAAGTTCTGGTATGATGACAGTTCAACCACCACCA
rJMSF019G14+          ACCCTCCAAGGTCAGGTTCATGTTTCAAGTTCTGGTATGATGACAGTTCAACCACCACCA
rJMSF011O02+          ACCCTCCAAGGTCAGGTTCATGTTTCAAGTTCTGGTATGATGACAGTTCAACCACCACCA
rJMSF024E22+          ACCCTCCAAGGTCAGGTTCATGTTTCAAGTTCTGGTATGATGACAGTTCAACCACCACCA
                      ____________________________________________________________
consensus             ACCCTCCAAGGTCAGGTTCATGTTTCAAGTTCTGGTATGATGACAGTTCAACCACCACCA
 
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rJMSF010I24+          ATGGTGTGCTATGGAACTATACATGGCGGTATCAACCGATTCGGATCTACTAGGCAAAAT
rJMSF019G14+          ATGGTGTGCTATGGAACTATACATGGCGGTATCAACCGATTCGGATNTACTAGGCAAAAT
rJMSF011O02+          ATGGTGTGCTATGGAACTATACATGGCGGTATCAACCGATTCGGATCTACTAGGCAAAAT
rJMSF024E22+          ATGGTGTGCTATGGAACTATACATGGCGGTATCAACCGATTCGGATNTACTAGGCAAAAT
                      ____________________________________________________________
consensus             ATGGTGTGCTATGGAACTATACATGGCGGTATCAACCGATTCGGATCTACTAGGCAAAAT
 
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rJMSF010I24+          ATGGTTCAGGCCCCTGGCTTTGATACTCTGCCTCTCCAACCAGCCAACCAATGCCCACAG
rJMSF019G14+          ATGGTTCAGGCCCCTGGCTTTGATACTCTGCCTCTCCAACCAGCCAACCAATGCCCACAG
rJMSF011O02+          ATGGTTCAGGCCCCTGGCTTTGATACTCTGCCTCTCCAACCAGCCAACCAATGCCCACAG
rJMSF024E22+          ATGGTTCAGGCCCCTGGCTTTGATACTNTGCCTCTCCAACCAGCCAACCAATGCCCACAG
                      ____________________________________________________________
consensus             ATGGTTCAGGCCCCTGGCTTTGATACTCTGCCTCTCCAACCAGCCAACCAATGCCCACAG
 
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rJMSF010I24+          ACCCTTGGCCGAGTACTTTTAGGCCCATAACCATAATTCTTGCTCAAAGCAAGCTTAAGC
rJMSF019G14+          ACCCTTGGCCGAGTACTTTTAGGCCCATAACCATAATTCTTGCTCAAAGCAAGCTTAAGC
rJMSF011O02+          ACCCTTGGCCGAGTACTTTTAGGCCCATAACCATAATTCTTGCTCAAAGCAAGCTTAAGC
rJMSF024E22+          ACCCTTGGCCGAGTACTTTTAGGCCCATAACCATAATTCTTGCTCAAAGCAAGCTTAAGC
                      ____________________________________________________________
consensus             ACCCTTGGCCGAGTACTTTTAGGCCCATAACCATAATTCTTGCTCAAAGCAAGCTTAAGC
 
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rJMSF010I24+          TGAAGGTGCAAAAATTAATACTGCTGCTAATATTATTTTCATATATTCTTTTTTGATGAC
rJMSF019G14+          TGAAGGTGCAAAAATTAATACTGCTGCTAATATTATTTTCATATATTCTTTTTTGATGAC
rJMSF011O02+          TGAAGGTGCAAAAATTAATACTGCTGCTAATATTATTTTCATATATTCTTTTTTGATGAC
rJMSF024E22+          TGAAGGTGCAAAAATTAATACTGCTGCTAATATTATTTTCATATATTCTTTTTTGATGAC
                      ____________________________________________________________
consensus             TGAAGGTGCAAAAATTAATACTGCTGCTAATATTATTTTCATATATTCTTTTTTGATGAC
 
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rJMSF010I24+          TGGCAAAGGGCTGTTCTATAATCTAGGTATATAAATGCTGCACCATATTTCATGTAGTCT
rJMSF019G14+          TGGCAAAGGGCTGTTCTATAATCTAGGTATATAAATGCTGCACCATATTTCATGTAGTCT
rJMSF011O02+          TGGCAAAGGGCTGTTCTATAATCTAGGTATATAAATGCTGCACCATATTTCATGTAGTCT
rJMSF024E22+          TGGCAAAGGGCTGTTCTATAATCTAGGTATATAAATGCTGCACCATATTTCATGTAGTCT
                      ____________________________________________________________
consensus             TGGCAAAGGGCTGTTCTATAATCTAGGTATATAAATGCTGCACCATATTTCATGTAGTCT
 
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rJMSF010I24+          TGATGC                                                      
rJMSF019G14+          TGATGCTGTAAAATATCTCTCACCTGAAGTGTTTTGTCACTTTTCTTTTCCTGTAATTAT
rJMSF011O02+          TGATGCTGTAAAATATCTCTCACCTG-AGTGTTTTGTCACTTTTCTTTTCCTGTAATTAT
rJMSF024E22+          TGATGCTGTAAAATATCTCTCACCTG-AGTGTTTTGTCACTTTTCTTTTCCTGTAATTAT
                      ____________________________________________________________
consensus             TGATGCTGTAAAATATCTCTCACCTG-AGTGTTTTGTCACTTTTCTTTTCCTGTAATTAT
 
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rJMSF019G14+          CTCTACTCTCCTGGATTTTTTTTTTCTTGTTATGAAC                       
rJMSF011O02+          CTCTACTCTCCTGGATTTTTTTTTTCTTGTTATGAAC                       
rJMSF024E22+          CTCTACTCTCCTGGATTTTTTTTTTCTTGTTATGAACAGAATATTCCAAGTGTAACATGA
                      ____________________________________________________________
consensus             CTCTACTCTCCTGGATTTTTTTTTTCTTGTTATGAACAGAATATTCCAAGTGTAACATGA
 
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rJMSF024E22+          TATGACAGGAGCAATAGTGAAACTCATCATCTTGTCTACAAGACATGCCAATTTTCCTCC
                      ____________________________________________________________
consensus             TATGACAGGAGCAATAGTGAAACTCATCATCTTGTCTACAAGACATGCCAATTTTCCTCC