Contig 005687:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031K08Sequence554003679 (2)ref|XP_004237937.1|1e-24PREDICTED: formin-like protein 3 [Solanum lycopersicum]675005687 (2)ref|XP_006363283.1|1e-12PREDICTED: bromodomain-containing protein 4-like [Solanum tuberosum]
JMSF024C20Sequence679003679 (2)ref|XP_004237937.1|4e-26PREDICTED: formin-like protein 3 [Solanum lycopersicum]758005687 (2)ref|XP_006363283.1|2e-11PREDICTED: bromodomain-containing protein 4-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF024C20+                                CGCTCCCCACCAATCAGATGCTGGGTGGTGGAGGGTTT
                      ____________________________________________________________
consensus                                   CGCTCCCCACCAATCAGATGCTGGGTGGTGGAGGGTTT
 
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rJMFF031K08+                                                     TACCGCCGTTTCCGGCG
rJMSF024C20+          ATCGGCGATCAGCGCCACGTTCAAGNTCAGCCTCCCTCCCCCTTACCGCCGTTTCCGGCG
                      ____________________________________________________________
consensus             ATCGGCGATCAGCGCCACGTTCAAGNTCAGCCTCCCTCCCCCTTACCGCCGTTTCCGGCG
 
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rJMFF031K08+          GTTCATGGGGCGGCGGAGTCCCCGATTTCCGCCTACATGAGGTTCCTCCGCGGCTCCATC
rJMSF024C20+          GTTCATGGGGCGGCGGAGTCCCCGATTTCCGCCTACATGAGGTTCCTCCGCGGCTCCATC
                      ____________________________________________________________
consensus             GTTCATGGGGCGGCGGAGTCCCCGATTTCCGCCTACATGAGGTTCCTCCGCGGCTCCATC
 
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rJMFF031K08+          TCCGGCGCCGCCATAGACTCCGATCCCAAGCGATTCTCCACCGCTCTCTCCCCGCTCGCC
rJMSF024C20+          TCCGGCGCCGCCATAGACTCCGATCCCAAGCGATTCTCCACCGCTCTCTCCCCGCTCGCC
                      ____________________________________________________________
consensus             TCCGGCGCCGCCATAGACTCCGATCCCAAGCGATTCTCCACCGCTCTCTCCCCGCTCGCC
 
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rJMFF031K08+          CCTCTCGATTCCCCGCGGTGGACCGGCCCAGCTCCGGCGCAGCCTCAACCGCCTCTTCCT
rJMSF024C20+          CCTCTCGATTCCCCGCGGTGGACCGGCCCAGCTCCGGCGCAGCCTCAACCGCCTCTTCCT
                      ____________________________________________________________
consensus             CCTCTCGATTCCCCGCGGTGGACCGGCCCAGCTCCGGCGCAGCCTCAACCGCCTCTTCCT
 
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rJMFF031K08+          CCGCCGCAGCTGCAGAACATTCCTCCACAGCCATCATCGGCGCCACCCATTCCACCATTT
rJMSF024C20+          CCGCCGCAGCTGCAGAACATTCCTCCACAGCCATCATCGGCGCCACCCATTCCACCATTT
                      ____________________________________________________________
consensus             CCGCCGCAGCTGCAGAACATTCCTCCACAGCCATCATCGGCGCCACCCATTCCACCATTT
 
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rJMFF031K08+          CCGGCGCTGCCATCATCCCCACTCCCCTTCGGGTGCTTGCCGTCGCCGAGGTCCTCTTAC
rJMSF024C20+          CCGGCGCTGCCATCATCCCCACTCCCCTTCGGGTGCTTGCCGTCGCCGAGGTCCTCTTAC
                      ____________________________________________________________
consensus             CCGGCGCTGCCATCATCCCCACTCCCCTTCGGGTGCTTGCCGTCGCCGAGGTCCTCTTAC
 
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rJMFF031K08+          CCGCTGCACTCTCCCGGTCTCCTCCTTTCTCCGTCCAGTCAACTAGGGTTCCAGCAGCTA
rJMSF024C20+          CCGCTGCACTCTCCCGGTCTCCTCCTTTCTCCGTCCAGTCAACTAGGGTTCCAGCAGCTA
                      ____________________________________________________________
consensus             CCGCTGCACTCTCCCGGTCTCCTCCTTTCTCCGTCCAGTCAACTAGGGTTCCAGCAGCTA
 
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rJMFF031K08+          CCCCTTTCGCCGACAGTTCCAGTCCCCAGCCCAACCTGGAAGGGCATTTGAGTAATTTCA
rJMSF024C20+          CCCCTTTCGCCGACAGTTCCAGTCCCCAGCCCAACCTGGAAGGGCATTTGAGTAATTTCA
                      ____________________________________________________________
consensus             CCCCTTTCGCCGACAGTTCCAGTCCCCAGCCCAACCTGGAAGGGCATTTGAGTAATTTCA
 
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rJMFF031K08+          CTTCAGTACAAACAAAATCCCAAAAAAGGTAAGAACTTTAATTAGGGTCTTGAATGAAAA
rJMSF024C20+          CTTCAGTACAAACAAAATCCCAAAAAAGGTAAGAACTTTAATTAGGGTCTTGAATGAAAA
                      ____________________________________________________________
consensus             CTTCAGTACAAACAAAATCCCAAAAAAGGTAAGAACTTTAATTAGGGTCTTGAATGAAAA
 
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rJMFF031K08+          CCAAAAAAATTCAATCTTTTTCACAATGGGTATATCATATATGGTATATTAGCTTGAAAC
rJMSF024C20+          CCAAAAAAATTCAATCTTTTTCACAATGGGTATATCATATATGGTATATTAGCTTGAAAC
                      ____________________________________________________________
consensus             CCAAAAAAATTCAATCTTTTTCACAATGGGTATATCATATATGGTATATTAGCTTGAAAC
 
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rJMFF031K08+          TTGTACATTTGGTGAGATGAATCCAAATTACCAATCTGAAAATAGGTGGTTCTTTTGTAA
rJMSF024C20+          TTGTACATTTGGTGAGATGAATCCAAATTACCAATCTGAAAATAGGTGGTTCTTTTGTAA
                      ____________________________________________________________
consensus             TTGTACATTTGGTGAGATGAATCCAAATTACCAATCTGAAAATAGGTGGTTCTTTTGTAA
 
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rJMFF031K08+          ATGGATGTTTAAGGACAGTGAAAAACAACCTTGTATTCCTTCTTCTCAGTCAAAAATT  
rJMSF024C20+          ATGGATGTTTAAGGACAGTGAAAAACAACCTTGTATTCCTTCTTCTCAGTCAAAAATTGT
                      ____________________________________________________________
consensus             ATGGATGTTTAAGGACAGTGAAAAACAACCTTGTATTCCTTCTTCTCAGTCAAAAATTGT