| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF046D20 | Sequence | 399 | 005684 (6) | 454 | 005684 (6) | ref|XP_009774845.1| | 3e-39 | PREDICTED: 54S ribosomal protein L12, mitochondrial [Nicotiana sylvestris] | |||
| JMSF023J17 | Sequence | 671 | 005684 (6) | ref|XP_009774845.1| | 2e-49 | PREDICTED: 54S ribosomal protein L12, mitochondrial [Nicotiana sylvestris] | 729 | 005684 (6) | ref|XP_009610142.1| | 1e-81 | PREDICTED: 54S ribosomal protein L12, mitochondrial-like [Nicotiana tomentosifo |
| JMSF038M06 | Sequence | 668 | 005684 (6) | ref|XP_006363497.1| | 5e-48 | PREDICTED: 54S ribosomal protein L12, mitochondrial-like [Solanum tuberosum] | 822 | 005684 (6) | ref|XP_009774845.1| | 1e-89 | PREDICTED: 54S ribosomal protein L12, mitochondrial [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF038M06- GGCTTCCTTCTTCTTCTCCAGACGGCG
JMFF046D20- GGCTTCCTTCTTCTTCTCCAGACGACG
JMSF023J17- GCTCGGCTTCCTTCTTCTTCTCCAGACGACG
____________________________________________________________
consensus GCTCGGCTTCCTTCTTCTTCTCCAGACGACG
. : . : . : . : . : . :
JMSF038M06- GTTCTCCCTCGTCTCCGGTCTCTGCGTTTCACGCCCTCCGCCCTGGGCGACACTCCTCTG
JMFF046D20- GTTCTCCCTCGTCTCCGGTCTCTGCGTTTCACGCCCTCCGCCCTGGGCGACACTCCTCTG
JMSF023J17- GTTCTCCCTCGTCTCCGGTCTCTGCGTTTCACGCCCTCCGCCCTGGGCGACACTCCTCTG
____________________________________________________________
consensus GTTCTCCCTCGTCTCCGGTCTCTGCGTTTCACGCCCTCCGCCCTGGGCGACACTCCTCTG
. : . : . : . : . : . :
JMSF038M06- GTCAGGCGATCACGCCCTCCGGCCTCCGGCCTCCGCCCTCGCTCCTCAGTCAGACGGTCA
JMFF046D20- GTCAGGCGATCACGCCCTCCGGCCTCCGGCCTCCGCCCTCGCTCCTCAGTCAGACGGTCA
JMSF023J17- GTCAGGCGATCACGCCCTCCGGCCTCCGGCCTCCGCCCTCGCTCCTCAGTCAGACGGTCA
____________________________________________________________
consensus GTCAGGCGATCACGCCCTCCGGCCTCCGGCCTCCGCCCTCGCTCCTCAGTCAGACGGTCA
. : . : . : . : . : . :
JMSF038M06- GACACTCAGACTCACTCCATCGACTCAGGCACTTAGCGGCTCTGCCTCACTGAGACACTG
JMFF046D20- GACACTCAGACTCACTCCATCGACTCAGGCACTTAGCGGCTCTGCCTCACTGAGACACTG
JMSF023J17- GACACTCAGACTCACTCCATCGACTCAGGCACTTAGCGGCTCTGCCTCACTGAGACACTG
rJMSF038M06+ ACTGAGACACTG
____________________________________________________________
consensus GACACTCAGACTCACTCCATCGACTCAGGCACTTAGCGGCTCTGCCTCACTGAGACACTG
. : . : . : . : . : . :
JMSF038M06- GAAGGAGGTGATTTGCTGCATAAGAGAGCACCAAATAAATGGTTGTTTATTAGTCATCTA
JMFF046D20- GAAGGAGGTGATTTGCTGCATAAGAGAGCACCAAATAAATGGTTGTTTATTAGTCATCTA
JMSF023J17- GAAGGAGGTGATTTGCTGCATAAGAGAGCACCAAATAAATGGTTGTTTATTAGTCATCTA
rJMSF038M06+ GAAGGAGGTGATTTGCTGCATAAGAGAGCACCAAATAAATGGTTGTTTATTAGTCATCTA
____________________________________________________________
consensus GAAGGAGGTGATTTGCTGCATAAGAGAGCACCAAATAAATGGTTGTTTATTAGTCATCTA
. : . : . : . : . : . :
JMSF038M06- CTGCATAGTATAATGGCTTTGATTACACGGTTAAGGCATCGTCTGCCTGGTCTACTCATA
JMFF046D20- CTGCATAGTATAATGGCTTTGATTACACGGTTAAGGCATCGTCTGCCTGGTCTACTCATA
JMSF023J17- CTGCATAGTATAATGGCTTTGATTACACGGTTAAGGCATCGTCTGCCTGGTCTACTCATA
rJMSF038M06+ CTGCATAGTATAATGGCTTTGATTACACGGTTAAGGCATCGTCTGCCTGGTCTACTCATA
rJMSF023J17+ CTACTCATA
____________________________________________________________
consensus CTGCATAGTATAATGGCTTTGATTACACGGTTAAGGCATCGTCTGCCTGGTCTACTCATA
. : . : . : . : . : . :
JMSF038M06- AGACAACCTATTCTGTACAATGTGACTGTACGATTTCCAGTTACCTCAGCTGGTTGCACT
JMFF046D20- AGACAACCTATTCTGTACAATGTGACTGTACGATTTCCAGTTACCTCAGCTGGTTGCACT
JMSF023J17- AGACAACCTATTCTGTACAATGTGACTGTACGATTTCCAGTTACCTCAGCTGGTTGCACT
rJMSF038M06+ AGACAACCTATTCTGTACAATGTGACTGTACGATTTCCAGTTACCTCAGCTGGTTGCACT
rJMSF023J17+ AGACAACCTATTCTGTACAATGTGACTGTACGATTTCCAGTTACCTCAGCTGGTTGCACT
____________________________________________________________
consensus AGACAACCTATTCTGTACAATGTGACTGTACGATTTCCAGTTACCTCAGCTGGTTGCACT
. : . : . : . : . : . :
JMSF038M06- CGACACATTGCTCAACCTGCCAGGAAAGAGGAAGAAGAGGAGGAAGAAGTAGAGATTGAT
JMFF046D20- CGACACATTGC
JMSF023J17- CGACACATTGCTCAACCTGCCAGGAAAGAGGAAGAAGAGGAGGAAGAAGTAGAGATTGAT
rJMSF038M06+ CGACACATTGCTCAACCTGCCAGGAAAGAGGAAGAAGAGGAGGAAGAAGTAGAGATTGAT
rJMSF023J17+ CGACACATTGCTCAACCTGCCAGGAAAGAGGAAGAAGAGGAGGAAGAAGTAGAGATTGAT
____________________________________________________________
consensus CGACACATTGCTCAACCTGCCAGGAAAGAGGAAGAAGAGGAGGAAGAAGTAGAGATTGAT
. : . : . : . : . : . :
JMSF038M06- CAGAGAAGACTTCCAGCTGATTATGACCCTGCAACGTTTGATCCAACCGAGCATCGCAGT
JMSF023J17- CAGAGAAGACTTCCAGCTGATTATGACCCTGCAACGTTTGATCCAACCGAGCATCGCAGT
rJMSF038M06+ CAGAGAAGACTTCCAGCTGATTATGACCCTGCAACGTTTGATCCAACCGAGCATCGCAGT
rJMSF023J17+ CAGAGAAGACTTCCAGCTGATTATGACCCTGCAACGTTTGATCCAACCGAGCATCGCAGT
____________________________________________________________
consensus CAGAGAAGACTTCCAGCTGATTATGACCCTGCAACGTTTGATCCAACCGAGCATCGCAGT
. : . : . : . : . : . :
JMSF038M06- CCTCCAACGGACAGAGTGTGGAGGCTTGTTGATGAAGTTTCGGGACTTACATTGGTTGAA
JMSF023J17- CCTCCAACGGACAGAGTGTGGAGGCTTGTTGATGAAGTTTCGGGACTTACATTGGTTGAA
rJMSF038M06+ CCTCCAACGGACAGAGTGTGGAGGCTTGTTGATGAAGTTTCGGGACTTACATTGGTTGAA
rJMFF046D20+ AA
rJMSF023J17+ CCTCCAACGGACAGAGTGTGGAGGCTTGTTGATGAAGTTTCGGGACTTACATTGGTTGAA
____________________________________________________________
consensus CCTCCAACGGACAGAGTGTGGAGGCTTGTTGATGAAGTTTCGGGACTTACATTGGTTGAA
. : . : . : . : . : . :
JMSF038M06- GTTGCAGAGCTGTCTGGCATTTTGATGAAGAAGTTGGGAATGACAGAACCACCTGTAGTG
JMSF023J17- GTTGCAGAGCTGTCTGGCATTTTGATGAAGAAGTTGGGAATGACAGAACCACCTGTAGTG
rJMSF038M06+ GTTGCAGAGCTGTCTGGCATTTTGATGAAGAAGTTGGGAATGACAGAACCACCTGTAGTG
rJMFF046D20+ GTTGCAGAGCTGTCTGGCATTTTGATGAAGAAGTTGGGAATGACAGAACCACCTGTAGTG
rJMSF023J17+ GTTGCAGAGCTGTCTGGCATTTTGATGAAGAAGTTGGGAATGACAGAACCACCTGTAGTG
____________________________________________________________
consensus GTTGCAGAGCTGTCTGGCATTTTGATGAAGAAGTTGGGAATGACAGAACCACCTGTAGTG
. : . : . : . : . : . :
JMSF038M06- GGGATTATGAAGGCGGGTGCAGCTGGCATGGCTGCAGC
JMSF023J17- GGGATTATGAAGGCGGGTGCAGCTGGCATGGCTGCAGCTA
rJMSF038M06+ GGGATTATGAAGGCGGGTGCAGCTGGCATGGCTGCAGCTACAATGAAGGGACCGGCAGCA
rJMFF046D20+ GGGATTATGAAGGCGGGTGCAGCTGGCATGGCTGCAGCTACAATGAAGGGACCGGCAGCA
rJMSF023J17+ GGGATTATGAAGGCGGGTGCAGCTGGCATGGCTGCAGCTACAATGAAGGGACCGGCAGCA
____________________________________________________________
consensus GGGATTATGAAGGCGGGTGCAGCTGGCATGGCTGCAGCTACAATGAAGGGACCGGCAGCA
. : . : . : . : . : . :
rJMSF038M06+ GCTAAGGAGGAAAAGAAACCTGAGAAGACTGTTTTTGAGCTGAAGATAGAGTCTTTTGAT
rJMFF046D20+ GCTAAGGAGGAAAAGAAACCTGAGAAGACTGTTTTTGAGCTGAAGATAGAGTCTTTTGAT
rJMSF023J17+ GCTAAGGAGGAAAAGAAACCTGAGAAGACTGTTTTTGAGCTGAAGATAGAGTCTTTTGAT
____________________________________________________________
consensus GCTAAGGAGGAAAAGAAACCTGAGAAGACTGTTTTTGAGCTGAAGATAGAGTCTTTTGAT
. : . : . : . : . : . :
rJMSF038M06+ GCTGCTCAAAAGATAAAGATAATTAAAGAGATCCGCAGTGTTACTGATTTAGGTCTCAAG
rJMFF046D20+ GCTGCTCAAAAGATAAAGATAATTAAAGAGATCCGCAGTGTTACTGATTTAGGTCTCAAG
rJMSF023J17+ GCTGCTCAAAAGATAAAGATAATTAAAGAGATCCGCAGTGTTACTGATTTAGGTCTCAAG
____________________________________________________________
consensus GCTGCTCAAAAGATAAAGATAATTAAAGAGATCCGCAGTGTTACTGATTTAGGTCTCAAG
. : . : . : . : . : . :
rJMSF038M06+ GAAGCAAAGGAATTAGTGGAGAAAGCGCCTGCAATATTCAAAAAGGGAGTTTCGAAGGAC
rJMFF046D20+ GAAGCAAAGGAATTAGTGGAGAAAGCGCCTGCAATATTCAAAAAGGGAGTTTCGAAGGAC
rJMSF023J17+ GAAGCAAAGGAATTAGTGGAGAAAGCGCCTGCAATATTCAAAAAGGGAGTTTCGAAGGAC
____________________________________________________________
consensus GAAGCAAAGGAATTAGTGGAGAAAGCGCCTGCAATATTCAAAAAGGGAGTTTCGAAGGAC
. : . : . : . : . : . :
rJMSF038M06+ GAAGGAGAGCAAATCATTGGGAAGATGAAGGCGGTTGGGGCCAAAGTTGTTATGGAATGA
rJMFF046D20+ GAAGGAGAGCAAATCATTGAGAAGATGAAGGCGGTTGGGGCCAAAGTTGTTATGGAATGA
rJMSF023J17+ GAAGGAGAGCAAATCATTGAGAAGATGAAGGCGGTTGGGGCCAAAGTTGTTATGGAATGA
____________________________________________________________
consensus GAAGGAGAGCAAATCATTGAGAAGATGAAGGCGGTTGGGGCCAAAGTTGTTATGGAATGA
. : . : . : . : . : . :
rJMSF038M06+ AACTGAACTTGCTTCTGTTCATCTATTGAATTTTCTGGAATCAATCAATGTTTCTCAGTT
rJMFF046D20+ AACTGAACTTGCTTCTGTTCATCTATTGAATTTTCTGGAATCAATCAATGTTTCTCAGTT
rJMSF023J17+ AACTGAACTTGCTTCTGTTCATCTATTGAATTTTCTGGAATCAATCAATGTTTCTCAGTT
____________________________________________________________
consensus AACTGAACTTGCTTCTGTTCATCTATTGAATTTTCTGGAATCAATCAATGTTTCTCAGTT
. : . : . : . : . : . :
rJMSF038M06+ TTAGCTTCAA
rJMFF046D20+ TTAGCTTCAA
rJMSF023J17+ TTAGCTTCAATCTTCTTGCTTTATTTTTGCCTTATCAAGGATTTAGAAATAATTTCATAC
____________________________________________________________
consensus TTAGCTTCAATCTTCTTGCTTTATTTTTGCCTTATCAAGGATTTAGAAATAATTTCATAC