Contig 005682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043G17Sequence635004634 (2)ref|XP_006338902.1|1e-102PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006610005682 (3)ref|XP_004230447.1|5e-59PREDICTED: coatomer subunit delta-like [Solanum lycopersicum] ref|XP_010314473.1
JMSF022O10Sequence644004634 (2)ref|XP_006338902.1|8e-111PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006723005682 (3)ref|XP_004230447.1|1e-49PREDICTED: coatomer subunit delta-like [Solanum lycopersicum] ref|XP_010314473.1
JMSF024O07Sequence656006060 (2)ref|XP_006338902.1|1e-106PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006744005682 (3)ref|XP_006349321.1|2e-108PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006

Alignment

This contig is upended


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rJMSF024O07+                                                                   ANG
                      ____________________________________________________________
consensus                                                                      ANG
 
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rJMSF024O07+          GAGTTGTTTGCAAATGAAAATATTCTAGGCCTCAAAGATCCAAATAGGCCATTTCCCACT
                      ____________________________________________________________
consensus             GAGTTGTTTGCAAATGAAAATATTCTAGGCCTCAAAGATCCAAATAGGCCATTTCCCACT
 
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rJMSF024O07+          GGTCAATCTGGTGATGGTGTTGGTCTCTTGAAGTGGAGAATGCAAAGCACTGATGAGTCA
                      ____________________________________________________________
consensus             GGTCAATCTGGTGATGGTGTTGGTCTCTTGAAGTGGAGAATGCAAAGCACTGATGAGTCA
 
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rJMSF024O07+          ATTTTGCCATTGACACTTAACTGCTGGCCCTCTGCTTCTGGAAAAGAAACCTATGTCAAT
                      ____________________________________________________________
consensus             ATTTTGCCATTGACACTTAACTGCTGGCCCTCTGCTTCTGGAAAAGAAACCTATGTCAAT
 
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rJMSF024O07+          ATTGAGTATGAAACTCCAGCAAACATGCAACTACAGAATGTTATAATTTCTGTGCCTCTT
rJMFF043G17+           TTGAGTATGAAACTCCAGCAAACATGNATCTTCAGAATGTNATAGTTTCTGTGCCTCTC
rJMSF022O10+                                                                   CTC
                      ____________________________________________________________
consensus             ATTGAGTATGAAACTCCAGCAAACATGCATCTTCAGAATGTTATAGTTTCTGTGCCTCTC
 
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rJMSF024O07+          CCAGCACTTAGAGATGCTCCAAATGTACAGCAGATAGACGGGGAGTGGAGGTTTGACTCC
rJMFF043G17+          CCAGCTCTCAGAGAGGCCCCAAACGTACAGCAGATTGATGGGGATNGGAGGTATGATTCC
rJMSF022O10+          CCAGCTCTCAGAGAGGCCCCAAACGTACAGCAGATTGATGGGGATTGGAGGTATGATTCC
                      ____________________________________________________________
consensus             CCAGCTCTCAGAGAGGCCCCAAACGTACAGCAGATTGATGGGGATTGGAGGTATGATTCC
 
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rJMSF024O07+          AGGAATTGTGTCCTGGAATGGTCTATAGTTCTCATTGATAACTCAAATCGCAGTGGTTCT
rJMFF043G17+          AGAAATTCTGTTCTGGAATGGTCTATAGATCTCATCGATGCCTCAAATCGCAGTGGATCT
rJMSF022O10+          AGAAATTCTGTTCTGGAATGGTCTATAGATCTCATCGATGCCTCAAATCGCAGTGGATCT
                      ____________________________________________________________
consensus             AGAAATTCTGTTCTGGAATGGTCTATAGATCTCATCGATGCCTCAAATCGCAGTGGATCT
 
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rJMSF024O07+          CTAGAATTTGTTGTTCCTGCAGCAGACCCATCACAGTTTTTCCCAATAAGTGCACGCTTT
rJMFF043G17+          CTAGAATTTGTTGTTCCTGCAGCTGATCCATCATCCTTTTTCCCAATATCTGCCCGTTTC
rJMSF022O10+          CTAGAATTTGTTGTTCCTGCAGCTGATCCATCATCCTTTTTCCCAATATCTGCCCGTTTC
                      ____________________________________________________________
consensus             CTAGAATTTGTTGTTCCTGCAGCTGATCCATCATCCTTTTTCCCAATATCTGCCCGTTTC
 
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rJMSF024O07+          ACTTCTTCAAGAACTTTTAGCGACTTGAAGGTTGTCAATATTCTTCCGCTGAGAGGTGGG
rJMFF043G17+          ACCTCTTCAAAAACTTTCAGCGACTTGAAGGTTACCAACATTTTGCCGCTGAGAGGTGGG
rJMSF022O10+          ACCTCTTCAAAAACTTTCAGCGACTTGAAGGTTACCAACATTTTGCCGCTGAGAGGTGGG
                      ____________________________________________________________
consensus             ACCTCTTCAAAAACTTTCAGCGACTTGAAGGTTACCAACATTTTGCCGCTGAGAGGTGGG
 
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rJMSF024O07+          GCGACACCAAAATTTGCGCAAAGAACTC                                
rJMFF043G17+          GCCACACCCAAATTCTCTCAAAGAACTCAGCTGGTTACTGAGAACTACCAAGTGGTCTGA
rJMSF022O10+          GCCACACCCAAATTCTCTCAAAGAACTCAGCTGGTTACTGAGAACTACCAAGTGGTCTGA
                      ____________________________________________________________
consensus             GCCACACCCAAATTCTCTCAAAGAACTCAGCTGGTTACTGAGAACTACCAAGTGGTCTGA
 
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rJMFF043G17+          CAATACTCAAACAGAAAGATGTGTAGCAATTAGAAATTGTTCAGTGTTTGAAATGCAAAA
rJMSF022O10+          CAATACTCAAACAGAAAGATGTGTAGCAATTAGAAATTGTTCAGTGTTTGAAATGCAAAA
                      ____________________________________________________________
consensus             CAATACTCAAACAGAAAGATGTGTAGCAATTAGAAATTGTTCAGTGTTTGAAATGCAAAA
 
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rJMFF043G17+          AAAGTTCATCCTCTTTAACCGTTTTGTTTACCAGTGTGGAATTTCAAGACTGAGTACTGC
rJMSF022O10+          AAAGTTCATCCTCTTTAACCGTTTTGTTTACCAGTGTGGAATTTCAAGACTGAGTACTGC
                      ____________________________________________________________
consensus             AAAGTTCATCCTCTTTAACCGTTTTGTTTACCAGTGTGGAATTTCAAGACTGAGTACTGC
 
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rJMFF043G17+          ATGTATATGGTGGATGGTGTTGGACATGTTCTAAAATGTGCACTAATGTTGTACTCTAAT
rJMSF022O10+          ATGTATATGGTGGATGGTGTTGGACATGTTCTAAAATGTGCACTAATGTTGTACTCTAAT
                      ____________________________________________________________
consensus             ATGTATATGGTGGATGGTGTTGGACATGTTCTAAAATGTGCACTAATGTTGTACTCTAAT
 
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rJMFF043G17+          TTCTTTAGTCGCGGTTTTCCTCCTTGAACAAC                            
rJMSF022O10+          TTCTTTAGTCGCGGTTTTCCTCCTTGAACAACAGATTATTATATGAAGAGGTTGTGTGTT
                      ____________________________________________________________
consensus             TTCTTTAGTCGCGGTTTTCCTCCTTGAACAACAGATTATTATATGAAGAGGTTGTGTGTT
 
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rJMSF022O10+          TTTCTCTATAAATGCTTTACATTCTAATGCACTGTAATATGCCAATCCTTATACTATGGA
                      ____________________________________________________________
consensus             TTTCTCTATAAATGCTTTACATTCTAATGCACTGTAATATGCCAATCCTTATACTATGGA
 
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rJMSF022O10+          TCCCAGTTTATAGTGCACTGTGGATCCTGGTACATGTGGATGTGTTTTATTTTGTGAGTT
                      ____________________________________________________________
consensus             TCCCAGTTTATAGTGCACTGTGGATCCTGGTACATGTGGATGTGTTTTATTTTGTGAGTT
 
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rJMSF022O10+          TTCGTGTCTTTTGTTGTTAAATTATGTACTTTAAGTGTATGAATTCTGACCAAAACAAAT
                      ____________________________________________________________
consensus             TTCGTGTCTTTTGTTGTTAAATTATGTACTTTAAGTGTATGAATTCTGACCAAAACAAAT