Contig 005679:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001J02Sequence376005679 (15)ref|XP_009626019.1|2e-33PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch734005679 (15)gb|KJB45975.1|1e-62hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth
JMSF004F22Sequence375005679 (15)ref|XP_009626019.1|3e-36PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch
JMSF004F24Sequence492005679 (15)ref|XP_007030998.1|4e-14ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1 [T
JMSF010C17Sequence316005679 (15)ref|XP_009626019.1|9e-20PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch782005679 (15)gb|KJB45975.1|7e-76hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth
JMSF010F24Sequence330005100 (4)587005679 (15)ref|XP_007030998.1|9e-27ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1 [T
JMSF020H06Sequence697005679 (15)ref|XP_009626019.1|3e-104PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch794005679 (15)gb|KJB45975.1|5e-74hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth
JMSF021F20Sequence621005679 (15)ref|XP_009626019.1|1e-82PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch802005679 (15)gb|KJB45975.1|2e-79hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth
JMSF022F10Sequence673005679 (15)ref|XP_009626019.1|2e-98PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch784005679 (15)ref|XP_004302392.1|1e-62PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch
JMSF027C10Sequence673005679 (15)ref|XP_009626019.1|6e-98PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch814005679 (15)gb|KJB45975.1|2e-79hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF010C17- GCAGAGTGCAGCAATCAGAACCACCCC
JMSF001J02- GGTTCCAGCAGAGTGCAGCAATCAGAACCACCCC
JMSF004F22- AATCAGAACCACCCC
JMSF021F20- GCAGAGTGCAGCAATCAGAACCACCCC
JMSF022F10- GAACCACCCC
JMSF027C10- AGAACCACCCC
JMSF020H06- AGAACCACCCC
                      ____________________________________________________________
consensus GGTTCCAGCAGAGTGCAGCAATCAGAACCACCCC
 
. : . : . : . : . : . :
JMSF010C17- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTT-CGGTTACCCATGGC
JMSF001J02- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTT-CGGTTACCCATGGC
JMSF004F22- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF021F20- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF022F10- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF027C10- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF020H06- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
                      ____________________________________________________________
consensus AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
 
. : . : . : . : . : . :
JMSF010C17- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF001J02- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF004F22- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF021F20- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF022F10- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF027C10- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF020H06- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
                      ____________________________________________________________
consensus GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
 
. : . : . : . : . : . :
JMSF010C17- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF001J02- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF004F22- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF021F20- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF022F10- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF027C10- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF020H06- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
                      ____________________________________________________________
consensus CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
 
. : . : . : . : . : . :
JMSF010C17- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF001J02- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF004F22- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF021F20- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF022F10- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF027C10- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF020H06- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
                      ____________________________________________________________
consensus AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
 
. : . : . : . : . : . :
JMSF010C17- TCGGCCCGCTAACTCGGATACCCTGNCGTATTTGGACATCTAC
JMSF001J02- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF004F22- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF021F20- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF022F10- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF027C10- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF020H06- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
                      ____________________________________________________________
consensus TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
 
. : . : . : . : . : . :
JMSF001J02- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAA
JMSF004F22- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGAC
JMSF021F20- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
JMSF022F10- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
JMSF027C10- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
JMSF020H06- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
                      ____________________________________________________________
consensus GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
 
. : . : . : . : . : . :
JMSF021F20- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
JMSF022F10- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
JMSF027C10- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
JMSF020H06- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
                      ____________________________________________________________
consensus TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
 
. : . : . : . : . : . :
JMSF021F20- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
JMSF022F10- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
JMSF027C10- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
JMSF020H06- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
                      ____________________________________________________________
consensus GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
 
. : . : . : . : . : . :
JMSF021F20- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
JMSF022F10- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
JMSF027C10- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
JMSF020H06- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
rJMSF020H06+ GAGAGAC
rJMSF021F20+ CTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
rJMSF010C17+ TGATGGAGAGAC
rJMSF027C10+ TTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
rJMSF022F10+ GAGAGAC
                      ____________________________________________________________
consensus TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
 
. : . : . : . : . : . :
JMSF021F20- AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTG
JMSF022F10- AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
JMSF027C10- AGCTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
JMSF020H06- AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF020H06+ AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF021F20+ AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF010C17+ AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF027C10+ AGCTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF001J02+ TTGATGCTACTGNAAAATCA
rJMSF022F10+ AGTTGCTATGGAAACTGAAGG-TTTGCCATTTATGATGC-TTGATGCTACTGAAAAATCA
                      ____________________________________________________________
consensus AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
 
. : . : . : . : . : . :
JMSF022F10- GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
JMSF027C10- GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
JMSF020H06- GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF020H06+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF021F20+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF010C17+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF027C10+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF001J02+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF022F10+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
                      ____________________________________________________________
consensus GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
 
. : . : . : . : . : . :
JMSF022F10- G
JMSF027C10- G
JMSF020H06- GACTAAAGGGAAAAGGTTTATGTTG
rJMSF020H06+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF021F20+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF010C17+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF027C10+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF001J02+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF022F10+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
                      ____________________________________________________________
consensus GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
 
. : . : . : . : . : . :
rJMSF020H06+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF021F20+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF010C17+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF027C10+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF001J02+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF010F24+ CCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGNGGTTATACT
rJMSF022F10+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
                      ____________________________________________________________
consensus ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
 
. : . : . : . : . : . :
rJMSF020H06+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF021F20+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF010C17+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF027C10+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF001J02+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF010F24+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAANCACACAGGAAATACAGTAGAGATGGT
rJMSF004F24+ GTAGAGATGGT
rJMSF022F10+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
                      ____________________________________________________________
consensus ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
 
. : . : . : . : . : . :
rJMSF020H06+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF021F20+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF010C17+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF027C10+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF001J02+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF010F24+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTNGCGT
rJMSF004F24+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF022F10+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
                      ____________________________________________________________
consensus GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
 
. : . : . : . : . : . :
rJMSF020H06+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF021F20+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF010C17+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF027C10+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF001J02+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF010F24+ CATTGACAAGGTGTATTGGGGTAGTCANGAGCAAATGACGGGAAANGTTGCTTCACCAGA
rJMSF004F24+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF022F10+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
                      ____________________________________________________________
consensus CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
 
. : . : . : . : . : . :
rJMSF020H06+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF021F20+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF010C17+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF027C10+ AGAGTGAGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF001J02+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF010F24+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATANTGATCCTTTGTAAGTGATTCC
rJMSF004F24+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF022F10+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
                      ____________________________________________________________
consensus AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
 
. : . : . : . : . : . :
rJMSF020H06+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF021F20+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF010C17+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF027C10+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF001J02+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF010F24+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTCGGCTGCTGAAGATGCTCGTGNTTCTGCA
rJMSF004F24+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF022F10+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
                      ____________________________________________________________
consensus AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
 
. : . : . : . : . : . :
rJMSF020H06+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF021F20+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF010C17+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF027C10+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF001J02+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF010F24+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGANTTCAAAGA
rJMSF004F24+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF022F10+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
                      ____________________________________________________________
consensus TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
 
. : . : . : . : . : . :
rJMSF020H06+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF021F20+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF010C17+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF027C10+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF001J02+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF010F24+ TCGCTTTCGNTCACGACACCACGGGGGAANGCTCNTATACGAAGCTAGTATAGGATAACN
rJMSF004F24+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF022F10+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
                      ____________________________________________________________
consensus TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
 
. : . : . : . : . : . :
rJMSF020H06+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF021F20+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF010C17+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF027C10+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF001J02+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF010F24+ AAAATAGCTCCAATCATCAACAGCCGGGACGTTGAGATTTNTGTACAATGAATTTGATTT
rJMSF004F24+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACNATGAATTTGATTT
rJMSF022F10+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
                      ____________________________________________________________
consensus AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
 
. : . : . : . : . : . :
rJMSF020H06+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF021F20+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF010C17+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF027C10+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCATTAT
rJMSF001J02+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF010F24+ NAGGCNTTNGAANGTGTTTTTATTAAGCTCAATCNGTTTCATCTCA
rJMSF004F24+ TAGGCTTTTGAATGTGTTTNTATTAAGCTCAATCTGTTTCATCTCATNATCTC
rJMSF022F10+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCATTATCTCCACTCTC
                      ____________________________________________________________
consensus TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCATTATCTCCACTCTC