| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001J02 | Sequence | 376 | 005679 (15) | ref|XP_009626019.1| | 2e-33 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch | 734 | 005679 (15) | gb|KJB45975.1| | 1e-62 | hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth |
| JMSF004F22 | Sequence | 375 | 005679 (15) | ref|XP_009626019.1| | 3e-36 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch | |||||
| JMSF004F24 | Sequence | 492 | 005679 (15) | ref|XP_007030998.1| | 4e-14 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1 [T | |||||
| JMSF010C17 | Sequence | 316 | 005679 (15) | ref|XP_009626019.1| | 9e-20 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch | 782 | 005679 (15) | gb|KJB45975.1| | 7e-76 | hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth |
| JMSF010F24 | Sequence | 330 | 005100 (4) | 587 | 005679 (15) | ref|XP_007030998.1| | 9e-27 | ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1 [T | |||
| JMSF020H06 | Sequence | 697 | 005679 (15) | ref|XP_009626019.1| | 3e-104 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch | 794 | 005679 (15) | gb|KJB45975.1| | 5e-74 | hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth |
| JMSF021F20 | Sequence | 621 | 005679 (15) | ref|XP_009626019.1| | 1e-82 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch | 802 | 005679 (15) | gb|KJB45975.1| | 2e-79 | hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth |
| JMSF022F10 | Sequence | 673 | 005679 (15) | ref|XP_009626019.1| | 2e-98 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch | 784 | 005679 (15) | ref|XP_004302392.1| | 1e-62 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch |
| JMSF027C10 | Sequence | 673 | 005679 (15) | ref|XP_009626019.1| | 6e-98 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, ch | 814 | 005679 (15) | gb|KJB45975.1| | 2e-79 | hypothetical protein B456_007G341400 [Gossypium raimondii] gb|KJB45976.1| hypoth |
This contig is upended
. : . : . : . : . : . :
JMSF010C17- GCAGAGTGCAGCAATCAGAACCACCCC
JMSF001J02- GGTTCCAGCAGAGTGCAGCAATCAGAACCACCCC
JMSF004F22- AATCAGAACCACCCC
JMSF021F20- GCAGAGTGCAGCAATCAGAACCACCCC
JMSF022F10- GAACCACCCC
JMSF027C10- AGAACCACCCC
JMSF020H06- AGAACCACCCC
____________________________________________________________
consensus GGTTCCAGCAGAGTGCAGCAATCAGAACCACCCC
. : . : . : . : . : . :
JMSF010C17- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTT-CGGTTACCCATGGC
JMSF001J02- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTT-CGGTTACCCATGGC
JMSF004F22- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF021F20- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF022F10- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF027C10- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
JMSF020H06- AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
____________________________________________________________
consensus AGCAAGAAAGCCCTGGAACCGTAGCGAGACCATGGCCACTGCCTTCCGGTTACCCATGGC
. : . : . : . : . : . :
JMSF010C17- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF001J02- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF004F22- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF021F20- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF022F10- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF027C10- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
JMSF020H06- GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
____________________________________________________________
consensus GTCCACGCTTCCGTGCTCGTCGTCTTCCTCTGCTTCTCTCAAACGACGCAGTTTCAGAGC
. : . : . : . : . : . :
JMSF010C17- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF001J02- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF004F22- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF021F20- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF022F10- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF027C10- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
JMSF020H06- CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
____________________________________________________________
consensus CATGTGCTCACTCGACAGTAGAAGCAGTGCCAGAATTCCCATGCCTCCGCTTAACCCTAG
. : . : . : . : . : . :
JMSF010C17- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF001J02- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF004F22- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF021F20- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF022F10- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF027C10- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
JMSF020H06- AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
____________________________________________________________
consensus AGACCCCTTCCTGAAGAAGCTAGCTTCTGTGGCGGCTAGAAATCCCGAAGCGATCCTTAG
. : . : . : . : . : . :
JMSF010C17- TCGGCCCGCTAACTCGGATACCCTGNCGTATTTGGACATCTAC
JMSF001J02- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF004F22- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF021F20- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF022F10- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF027C10- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
JMSF020H06- TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
____________________________________________________________
consensus TCGGCCCGCTAACTCGGATACCCTGCCGTATTTGGACATCTACGACAGCCCAAAACTCAT
. : . : . : . : . : . :
JMSF001J02- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAA
JMSF004F22- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGAC
JMSF021F20- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
JMSF022F10- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
JMSF027C10- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
JMSF020H06- GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
____________________________________________________________
consensus GGCCTCTCCTGCTCAGCTGGAGAGGTCAGCTTCCTACAATGAACACAGGCCAAGGAGACC
. : . : . : . : . : . :
JMSF021F20- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
JMSF022F10- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
JMSF027C10- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
JMSF020H06- TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
____________________________________________________________
consensus TCCCCCAGATTTACCATCATTGTTGCTCCATGGTAGAATAGTTTACATTGGGATGCCATT
. : . : . : . : . : . :
JMSF021F20- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
JMSF022F10- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
JMSF027C10- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
JMSF020H06- GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
____________________________________________________________
consensus GGTACCTGCTGTCACAGAGCTTGTAATTGCAGAGTTGATGTACCTACAATATATGGACCC
. : . : . : . : . : . :
JMSF021F20- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
JMSF022F10- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
JMSF027C10- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
JMSF020H06- TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
rJMSF020H06+ GAGAGAC
rJMSF021F20+ CTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
rJMSF010C17+ TGATGGAGAGAC
rJMSF027C10+ TTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
rJMSF022F10+ GAGAGAC
____________________________________________________________
consensus TAACGAGCCAATTTATCTTTACATCAACTCTACTGGAACTGCTCGTGCTGATGGAGAGAC
. : . : . : . : . : . :
JMSF021F20- AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTG
JMSF022F10- AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
JMSF027C10- AGCTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
JMSF020H06- AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF020H06+ AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF021F20+ AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF010C17+ AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF027C10+ AGCTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
rJMSF001J02+ TTGATGCTACTGNAAAATCA
rJMSF022F10+ AGTTGCTATGGAAACTGAAGG-TTTGCCATTTATGATGC-TTGATGCTACTGAAAAATCA
____________________________________________________________
consensus AGTTGCTATGGAAACTGAAGGTTTTGCAATTTATGATGCTTTGATGCTACTGAAAAATCA
. : . : . : . : . : . :
JMSF022F10- GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
JMSF027C10- GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
JMSF020H06- GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF020H06+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF021F20+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF010C17+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF027C10+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF001J02+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
rJMSF022F10+ GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
____________________________________________________________
consensus GATATACACTATTGCAATTGGGGCAGCCGTAGGTCAGGCATGCCTCTTGCTTGCTGCAGG
. : . : . : . : . : . :
JMSF022F10- G
JMSF027C10- G
JMSF020H06- GACTAAAGGGAAAAGGTTTATGTTG
rJMSF020H06+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF021F20+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF010C17+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF027C10+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF001J02+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
rJMSF022F10+ GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
____________________________________________________________
consensus GACTAAAGGGAAAAGGTTTATGTTGCCAAATGCAAAAGCTTTGATTCAACAGCCTCGTGT
. : . : . : . : . : . :
rJMSF020H06+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF021F20+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF010C17+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF027C10+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF001J02+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
rJMSF010F24+ CCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGNGGTTATACT
rJMSF022F10+ ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
____________________________________________________________
consensus ACCGTCGTCCGGGTTGATGCAAGCCAGTGATGTTTCTATCTGGGCTAAGGAGGTTATACT
. : . : . : . : . : . :
rJMSF020H06+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF021F20+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF010C17+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF027C10+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF001J02+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
rJMSF010F24+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAANCACACAGGAAATACAGTAGAGATGGT
rJMSF004F24+ GTAGAGATGGT
rJMSF022F10+ ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
____________________________________________________________
consensus ACAAAGAGATACCCTTACTAAACTTTTGGCCAAGCACACAGGAAATACAGTAGAGATGGT
. : . : . : . : . : . :
rJMSF020H06+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF021F20+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF010C17+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF027C10+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF001J02+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF010F24+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTNGCGT
rJMSF004F24+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
rJMSF022F10+ GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
____________________________________________________________
consensus GGCTAAGTCTATGAAAAGACAATATTATATGGATGCTGAAGCAGCAATAGAATTTGGCGT
. : . : . : . : . : . :
rJMSF020H06+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF021F20+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF010C17+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF027C10+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF001J02+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF010F24+ CATTGACAAGGTGTATTGGGGTAGTCANGAGCAAATGACGGGAAANGTTGCTTCACCAGA
rJMSF004F24+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
rJMSF022F10+ CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
____________________________________________________________
consensus CATTGACAAGGTGTATTGGGGTAGTCAGGAGCAAATGACGGGAAAAGTTGCTTCACCAGA
. : . : . : . : . : . :
rJMSF020H06+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF021F20+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF010C17+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF027C10+ AGAGTGAGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF001J02+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF010F24+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATANTGATCCTTTGTAAGTGATTCC
rJMSF004F24+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
rJMSF022F10+ AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
____________________________________________________________
consensus AGAGTGGGACAAGAGTGCAGGAATTAAACCCGTTGATATTGATCCTTTCTAAGTGATTCC
. : . : . : . : . : . :
rJMSF020H06+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF021F20+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF010C17+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF027C10+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF001J02+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF010F24+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTCGGCTGCTGAAGATGCTCGTGNTTCTGCA
rJMSF004F24+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
rJMSF022F10+ AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
____________________________________________________________
consensus AAGAAATTGTCCAACGCTTCCGTAGGCTTGTTGGCTGCTGAAGATGCTCGTGTTTCTGCA
. : . : . : . : . : . :
rJMSF020H06+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF021F20+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF010C17+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF027C10+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF001J02+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF010F24+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGANTTCAAAGA
rJMSF004F24+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
rJMSF022F10+ TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
____________________________________________________________
consensus TCGATGGGTTTAGGGTTTTTGAGAACCAGATGTGATGAGCAAGATTGTAGAATTCAAAGA
. : . : . : . : . : . :
rJMSF020H06+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF021F20+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF010C17+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF027C10+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF001J02+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF010F24+ TCGCTTTCGNTCACGACACCACGGGGGAANGCTCNTATACGAAGCTAGTATAGGATAACN
rJMSF004F24+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
rJMSF022F10+ TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
____________________________________________________________
consensus TTGCTTTCGATCACGACACCACGGGGGAATGCTCTTATACGAAGCTAGTATAGGATAACG
. : . : . : . : . : . :
rJMSF020H06+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF021F20+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF010C17+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF027C10+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF001J02+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
rJMSF010F24+ AAAATAGCTCCAATCATCAACAGCCGGGACGTTGAGATTTNTGTACAATGAATTTGATTT
rJMSF004F24+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACNATGAATTTGATTT
rJMSF022F10+ AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
____________________________________________________________
consensus AAAATAGCTCCAATCATCAACAGCCGGGA-GTTGAGATTTGTGTACAATGAATTTGATTT
. : . : . : . : . : . :
rJMSF020H06+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF021F20+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF010C17+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF027C10+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCATTAT
rJMSF001J02+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCAT
rJMSF010F24+ NAGGCNTTNGAANGTGTTTTTATTAAGCTCAATCNGTTTCATCTCA
rJMSF004F24+ TAGGCTTTTGAATGTGTTTNTATTAAGCTCAATCTGTTTCATCTCATNATCTC
rJMSF022F10+ TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCATTATCTCCACTCTC
____________________________________________________________
consensus TAGGCTTTTGAATGTGTTTTTATTAAGCTCAATCTGTTTCATCTCATTATCTCCACTCTC