Contig 005677:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019J17Sequence511009413 (6)ref|XP_006359905.1|1e-14PREDICTED: cyclin-T1-4-like isoform X2 [Solanum tuberosum]786005677 (4)
JMSF021O04Sequence677009413 (6)ref|XP_004247372.1|1e-21PREDICTED: cyclin-T1-3 [Solanum lycopersicum]798005677 (4)
JMSF025I13Sequence374009413 (6)782005677 (4)
JMSF031C22Sequence633009413 (6)ref|XP_009793877.1|4e-26PREDICTED: cyclin-T1-3-like isoform X2 [Nicotiana sylvestris]460005677 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019J17+ ACTAGC
rJMSF025I13+ ACTAGC
rJMSF021O04+ TCTGAAGTTAAAACTAGC
                      ____________________________________________________________
consensus TCTGAAGTTAAAACTAGC
 
. : . : . : . : . : . :
rJMSF019J17+ CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
rJMSF025I13+ CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
rJMSF021O04+ CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
                      ____________________________________________________________
consensus CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
 
. : . : . : . : . : . :
rJMSF019J17+ TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
rJMSF025I13+ TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
rJMSF021O04+ TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
                      ____________________________________________________________
consensus TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
 
. : . : . : . : . : . :
rJMSF019J17+ AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
rJMSF031C22+ TTTTTCGGTGTCCAGATA
rJMSF025I13+ AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
rJMSF021O04+ AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
                      ____________________________________________________________
consensus AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
 
. : . : . : . : . : . :
rJMSF019J17+ GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
rJMSF031C22+ GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
rJMSF025I13+ GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
rJMSF021O04+ GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
                      ____________________________________________________________
consensus GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
 
. : . : . : . : . : . :
rJMSF019J17+ AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
rJMSF031C22+ AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAGACCTACTGTGTCCT
rJMSF025I13+ AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
rJMSF021O04+ AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
                      ____________________________________________________________
consensus AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
 
. : . : . : . : . : . :
rJMSF019J17+ GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
rJMSF031C22+ GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
rJMSF025I13+ GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
rJMSF021O04+ GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
                      ____________________________________________________________
consensus GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
 
. : . : . : . : . : . :
rJMSF019J17+ GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
rJMSF031C22+ GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTNTGGGGCACTTA
rJMSF025I13+ GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
rJMSF021O04+ GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
                      ____________________________________________________________
consensus GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
 
. : . : . : . : . : . :
rJMSF019J17+ AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
rJMSF031C22+ AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
rJMSF025I13+ AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
rJMSF021O04+ AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
                      ____________________________________________________________
consensus AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
 
. : . : . : . : . : . :
rJMSF019J17+ GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
rJMSF031C22+ GGCTTCTTGCAGGGAGTAGTCATTTANTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
rJMSF025I13+ GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
rJMSF021O04+ GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
                      ____________________________________________________________
consensus GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
 
. : . : . : . : . : . :
rJMSF019J17+ GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
rJMSF031C22+ GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCTTTTNGGGGTGGGGAGATG
rJMSF025I13+ GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
rJMSF021O04+ GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
                      ____________________________________________________________
consensus GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
 
. : . : . : . : . : . :
rJMSF019J17+ CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCTTTAGGTTTGTGC
rJMSF025I13+ CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCTTTAGGTTTGTGC
rJMSF021O04+ CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCNTTAGGTTTGTGC
                      ____________________________________________________________
consensus CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCTTTAGGTTTGTGC
 
. : . : . : . : . : . :
rJMSF019J17+ CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
rJMSF025I13+ CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
rJMSF021O04+ CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
                      ____________________________________________________________
consensus CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
 
. : . : . : . : . : . :
rJMSF019J17+ CTGAGTATCATGTGCTTCGCAGATGTTTTACTTGTCTCTAAC
rJMSF025I13+ CTGAGTATCGTGTGCTTCGCAGATGTTTTACTTGTCTCTAAC
rJMSF021O04+ CTGAGTATCATGTGCTTCGCAGATGTTTTACTTGTCTCTAACAAGGAAAGAGTGGCTCAC
                      ____________________________________________________________
consensus CTGAGTATCATGTGCTTCGCAGATGTTTTACTTGTCTCTAACAAGGAAAGAGTGGCTCAC