Contig 005677:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF019J17+                                                                ACTAGC
rJMSF025I13+                                                                ACTAGC
rJMSF021O04+                                                    TCTGAAGTTAAAACTAGC
                      ____________________________________________________________
consensus                                                       TCTGAAGTTAAAACTAGC
 
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rJMSF019J17+          CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
rJMSF025I13+          CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
rJMSF021O04+          CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
                      ____________________________________________________________
consensus             CATTTCTTGTGGATGCTTTTTTCCATAACATGTAAATAGCAATTCATTGGCTGTAGAAGA
 
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rJMSF019J17+          TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
rJMSF025I13+          TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
rJMSF021O04+          TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
                      ____________________________________________________________
consensus             TAGTCACAGATGCTCCAGAAGCAGTTTTGCCATGACACTGTTTTTCACGTCACAAGGAAG
 
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rJMSF019J17+          AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
rJMSF031C22+                                                    TTTTTCGGTGTCCAGATA
rJMSF025I13+          AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
rJMSF021O04+          AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
                      ____________________________________________________________
consensus             AAACCTACTGTGTCCTCGTGCACTAATTTCCATATCCCCTATTTTTTTGGTGTCCAGATA
 
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rJMSF019J17+          GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
rJMSF031C22+          GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
rJMSF025I13+          GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
rJMSF021O04+          GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
                      ____________________________________________________________
consensus             GGACAATGATAAATAGGGCAGTGAACCTGAAAAGGTGTAGAAGATAGTCACAGATGCTCC
 
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rJMSF019J17+          AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
rJMSF031C22+          AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAGACCTACTGTGTCCT
rJMSF025I13+          AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
rJMSF021O04+          AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
                      ____________________________________________________________
consensus             AGAAGCAGTTTTGCCATGACATTGTTTTTCACGTCACAAGGAAGAAACCTACTGTGTCCT
 
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rJMSF019J17+          GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
rJMSF031C22+          GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
rJMSF025I13+          GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
rJMSF021O04+          GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
                      ____________________________________________________________
consensus             GGTGCACTAATTTCCTTATCACCTATTTTTTTGGTGTCCACATAGGACACTGATAAATAG
 
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rJMSF019J17+          GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
rJMSF031C22+          GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTNTGGGGCACTTA
rJMSF025I13+          GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
rJMSF021O04+          GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
                      ____________________________________________________________
consensus             GGCAGTGAACCTGAAAAGGTGTTTGGTGAGTTATTGGCTTGAAAATTTTTGGGGCACTTA
 
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rJMSF019J17+          AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
rJMSF031C22+          AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
rJMSF025I13+          AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
rJMSF021O04+          AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
                      ____________________________________________________________
consensus             AGGCAAGTGTTTAACAGCCCTAGTATAGCAATAGTTTATATTGCATAAACTATTACACTG
 
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rJMSF019J17+          GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
rJMSF031C22+          GGCTTCTTGCAGGGAGTAGTCATTTANTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
rJMSF025I13+          GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
rJMSF021O04+          GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
                      ____________________________________________________________
consensus             GGCTTCTTGCAGGGAGTAGTCATTTATTTGTGGGGTTTATTGGCTGATGTATGGGGACTT
 
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rJMSF019J17+          GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
rJMSF031C22+          GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCTTTTNGGGGTGGGGAGATG
rJMSF025I13+          GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
rJMSF021O04+          GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
                      ____________________________________________________________
consensus             GGGGTGATTGAGAATGGTTCTTGAATTGAGTAGTAGTTTTCCTTTGGGGGTGGGGAGATG
 
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rJMSF019J17+          CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCTTTAGGTTTGTGC
rJMSF025I13+          CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCTTTAGGTTTGTGC
rJMSF021O04+          CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCNTTAGGTTTGTGC
                      ____________________________________________________________
consensus             CGTAACTATTATACTGAGCCTTTGGATAGGAAAAGTGCCTCCATTGCTTTAGGTTTGTGC
 
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rJMSF019J17+          CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
rJMSF025I13+          CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
rJMSF021O04+          CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
                      ____________________________________________________________
consensus             CTCAACATCTTATGTAAGCTTCGACAGCCAATTAGGATCCCTCAAGCAAGGTGTTGTTGG
 
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rJMSF019J17+          CTGAGTATCATGTGCTTCGCAGATGTTTTACTTGTCTCTAAC                  
rJMSF025I13+          CTGAGTATCGTGTGCTTCGCAGATGTTTTACTTGTCTCTAAC                  
rJMSF021O04+          CTGAGTATCATGTGCTTCGCAGATGTTTTACTTGTCTCTAACAAGGAAAGAGTGGCTCAC
                      ____________________________________________________________
consensus             CTGAGTATCATGTGCTTCGCAGATGTTTTACTTGTCTCTAACAAGGAAAGAGTGGCTCAC