Contig 005675:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF022L02+                                                                 TGAGA
                      ____________________________________________________________
consensus                                                                    TGAGA
 
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rJMSF022L02+          CCATGATACCTCCGTTCAATGCCAATCATGTTGGTATGCGGTCCAATTCTGCTTTATACT
                      ____________________________________________________________
consensus             CCATGATACCTCCGTTCAATGCCAATCATGTTGGTATGCGGTCCAATTCTGCTTTATACT
 
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rJMSF022L02+          TGCACTCAACTCAGTATCCTTGTCAGCGCCCTGGAATGCCTTTCATCCACCATCATGAAC
rJMSF021L09+                                     GCCCTGGAATGCCTTTCATCCACCATCATGAAC
                      ____________________________________________________________
consensus             TGCACTCAACTCAGTATCCTTGTCAGCGCCCTGGAATGCCTTTCATCCACCATCATGAAC
 
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rJMSF022L02+          AAATTCAAGTTCCCCAACCCTTTACACAGTCTCATCACCAGCAACCTGATGCAAG-TTTT
rJMSF021L09+          AAATTCAAGTTCCCCAACCC-TTACACAGTCTCATCACCAGCAACCTGATGCAAGTTTTT
                      ____________________________________________________________
consensus             AAATTCAAGTTCCCCAACCCTTTACACAGTCTCATCACCAGCAACCTGATGCAAGTTTTT
 
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rJMSF022L02+          GGATTAGCCCGGCCCCGATAAGGGGCATGGGCCATGCCTGCATCCTGCCTCAGCATGTTG
rJMSF021L09+          GGATTAGCCCGGCCCCGATAAGGGGCATGGGCCATGCCTGCATCCTGCCTCAGCATGTTG
                      ____________________________________________________________
consensus             GGATTAGCCCGGCCCCGATAAGGGGCATGGGCCATGCCTGCATCCTGCCTCAGCATGTTG
 
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rJMSF022L02+          AGAGTTCATGATCTGAGGCAGCTGTTGAGCAGAACATTTTTGCATAGGCAGGATGCAGGC
rJMSF021L09+          AGAGTTCATGATCTGAGGCAGCTGTTGAGCAGAACATTTTTGCATAGGCAGGATGCAGGC
                      ____________________________________________________________
consensus             AGAGTTCATGATCTGAGGCAGCTGTTGAGCAGAACATTTTTGCATAGGCAGGATGCAGGC
 
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rJMSF022L02+          ATTAGCATCCGAGGGTGCTTGGTGTGGATGTGTCGAAAGTTGAATATATTCCTACTTGAT
rJMSF021L09+          ATTAGCATCCGAGGGTGCTTGGTGTGGATGTGTCGAAAGTTGAATATATTCCTACTTGAT
                      ____________________________________________________________
consensus             ATTAGCATCCGAGGGTGCTTGGTGTGGATGTGTCGAAAGTTGAATATATTCCTACTTGAT
 
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rJMSF022L02+          GCACACCACTGCAATCCCTCGGCTTTGTGGAGCTCCTTCCTCACTTGAAGAGGCTCAAAG
rJMSF021L09+          GCACACCACTGCAATCCCTCGGCTTTGTGGAGCTCCTTCCTCACTTGAAGAGGCTCAAAG
                      ____________________________________________________________
consensus             GCACACCACTGCAATCCCTCGGCTTTGTGGAGCTCCTTCCTCACTTGAAGAGGCTCAAAG
 
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rJMSF022L02+          GTTATGGCAGTTCCATTGTTTGGAAAAGTTCTGATTGCCATACATACAACAATGGAGATG
rJMSF021L09+          GTTATGGCAGTTCCATTGTTTGGAAAAGTTCTGATTGCCATACATACAACAATGGAGATG
                      ____________________________________________________________
consensus             GTTATGGCAGTTCCATTGTTTGGAAAAGTTCTGATTGCCATACATACAACAATGGAGATG
 
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rJMSF022L02+          GCAAAATAAGAACGTTCGGAGCTATGAATACATTCGATGTCGGCAAGAGTTGTAGTGCCA
rJMSF021L09+          GCAAAATAAGAACGTTCGGAGCTATGAATACATTCGATGTCGGCAAGAGTTGTAGTGCCA
                      ____________________________________________________________
consensus             GCAAAATAAGAACGTTCGGAGCTATGAATACATTCGATGTCGGCAAGAGTTGTAGTGCCA
 
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rJMSF022L02+          TAAAGCTGTGTCGTCCTGCCACTACAGATACAGAACCCTGGAAAAACATGGTCTGAGGTA
rJMSF021L09+          TAAAGCTGTGTCGTCCTGCCACTACAGATACAGAACCCTGGAAAAACATGGTCTGAGGTA
                      ____________________________________________________________
consensus             TAAAGCTGTGTCGTCCTGCCACTACAGATACAGAACCCTGGAAAAACATGGTCTGAGGTA
 
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rJMSF022L02+          TTTGTTGAAGTGAGGGTGGTGTAGCAGTGGCTTTTGTTGGCGGGACAGTTGTACGCTCTG
rJMSF021L09+          TTTGTTGAAGTGAGGGTGG-GTAGCAGTGGCTTTTGTTGACGGGACAGTTGTACGCTCTG
                      ____________________________________________________________
consensus             TTTGTTGAAGTGAGGGTGGTGTAGCAGTGGCTTTTGTTGGCGGGACAGTTGTACGCTCTG
 
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rJMSF022L02+          ATTGTCAATTACTTTTTATAGCACATGTGATGTATTACACCAGTCTTCTTATTCTGTTAC
rJMSF021L09+          ATTGTCAATTACTTTTTATAGCACATGTGATGTATTACACCAGTCTTCTTATTCTGTTAC
                      ____________________________________________________________
consensus             ATTGTCAATTACTTTTTATAGCACATGTGATGTATTACACCAGTCTTCTTATTCTGTTAC
 
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rJMSF022L02+          TTTACTGGGTCGCAAACTGATAGCTTATTTTGGCTAATCTTATATT              
rJMSF021L09+          TTTACTGGGTCGCAAACTGATAGCTTATTTTGGCTAATCTTATATTTGACATGTATGTTA
                      ____________________________________________________________
consensus             TTTACTGGGTCGCAAACTGATAGCTTATTTTGGCTAATCTTATATTTGACATGTATGTTA
 
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rJMSF021L09+          TTATTAGAGTAATTATTTGATGTACCGTCACTATAATGAATACACCAACCGGTGAATCAC
                      ____________________________________________________________
consensus             TTATTAGAGTAATTATTTGATGTACCGTCACTATAATGAATACACCAACCGGTGAATCAC