Contig 005674:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018J19Sequence145005674 (3)
JMSF015L11Sequence505006708 (3)ref|XP_004239021.1|236PREDICTED: uncharacterized protein LOC101259744 [Solanum lycopersicum]790005674 (3)ref|XP_009793987.1|4e-113PREDICTED: uncharacterized protein LOC104240797 isoform X4 [Nicotiana sylvestri
JMSF021I22Sequence667006708 (3)emb|CDP00474.1|2e-127unnamed protein product [Coffea canephora]757005674 (3)ref|XP_009793987.1|7e-105PREDICTED: uncharacterized protein LOC104240797 isoform X4 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF015L11+                                                       AGTGCNAGGATAGAC
                      ____________________________________________________________
consensus                                                          AGTGCNAGGATAGAC
 
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rJMSF015L11+          CGAAGCTTCTCTTTGATATAATCTGCACTTTGACAGACATGCAATATGTGGTTTTCCATG
rJMSF021I22+                                 TGCACTTTGACAGACATGCAATATGTGGTTTTCCATG
                      ____________________________________________________________
consensus             CGAAGCTTCTCTTTGATATAATCTGCACTTTGACAGACATGCAATATGTGGTTTTCCATG
 
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rJMSF015L11+          GCAATGTAGATACTGTGGGACCAAACGCTCACCAGGAGTACTGCATTCGGCATATTGATG
rJMSF021I22+          GCAATGTAGATACTGTGGGACCAAACGCTCACCAGGAGTACTGCATTCGGCATATTGATG
                      ____________________________________________________________
consensus             GCAATGTAGATACTGTGGGACCAAACGCTCACCAGGAGTACTGCATTCGGCATATTGATG
 
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rJMSF015L11+          GATCCCCGGTTAAATCCGATGCAGAAAGACAAAGAGTAATTCAATGTCTTGAGGCTGCAA
rJMSF021I22+          GATCCCCGGTTAAATCCGATGCAGAAAGACAAAGAGTAATTCAATGTCTTGAGGCTGCAA
                      ____________________________________________________________
consensus             GATCCCCGGTTAAATCCGATGCAGAAAGACAAAGAGTAATTCAATGTCTTGAGGCTGCAA
 
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rJMSF015L11+          TACTAAGAAGGGTATCCGAGGGATTGAAGCTAGAACTGTGTACTACTGATAGAACTGGGC
rJMSF021I22+          TACTAAGAAGGGTATCCGAGGGATTGAAGCTAGAACTGTGTACTACTGATAGAACTGGGC
                      ____________________________________________________________
consensus             TACTAAGAAGGGTATCCGAGGGATTGAAGCTAGAACTGTGTACTACTGATAGAACTGGGC
 
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rJMSF015L11+          TGCTGTCTGATGTGACTCGAATCTTTCGTGAGAATAGTCTCACTGTGACCAGGGCCGAAG
rJMSF021I22+          TGCTGTCTGATGTGACTCGAATCTTTCGTGAGAATAGTCTCACTGTGACCAGGGCCGAAG
                      ____________________________________________________________
consensus             TGCTGTCTGATGTGACTCGAATCTTTCGTGAGAATAGTCTCACTGTGACCAGGGCCGAAG
 
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rJMSF015L11+          TCACGACAAGAAGTGGCAAAGCAGTGAACACGTTTTATGTTCGTGATGCCTCAGGGTACC
rJMSF021I22+          TCACGACAAGAAGTGGCAAAGCAGTGAACACGTTTTATGTTCGTGATGCCTCAGGGTACC
                      ____________________________________________________________
consensus             TCACGACAAGAAGTGGCAAAGCAGTGAACACGTTTTATGTTCGTGATGCCTCAGGGTACC
 
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rJMSF015L11+          CCGTAGATGCCAAGATTGTGGAGTCTGTTCGGCAAACAATTGGGCTGACAATTCTCCGGG
rJMSF021I22+          CCGTAGATGCCAAGATTGTGGAGTCTGTTCGGCAAACAATTGGGCTGACAATTCTCCGGG
                      ____________________________________________________________
consensus             CCGTAGATGCCAAGATTGTGGAGTCTGTTCGGCAAACAATTGGGCTGACAATTCTCCGGG
 
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rJMSF015L11+          TGAAAGGCAGTTGTGAAGCGTTAAATTCAGCTCCTCCTCAGGAATCTCCAACCCGGTTCC
rJMSF021I22+          TGAAAGGCAGTTGTGAAGCGTTAAATTCAGCTCCTCCTCAGGAATCTCCAACCCGGTTCC
                      ____________________________________________________________
consensus             TGAAAGGCAGTTGTGAAGCGTTAAATTCAGCTCCTCCTCAGGAATCTCCAACCCGGTTCC
 
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rJMSF015L11+          TCTTTGGTGGTCTCTTCAAGTCGAGATCCTTTTGCAACTTCGGTTTGGTTAGATCCTATT
rJMFF018J19+                      TCTTCAAGTCGAGATCCTTNTGCAANTTCGGTTTGGNTNGATCCTATT
rJMSF021I22+          TCTTTGGTGGTCTCTTCAAGTCGAGATCCTTTTGCAACTTCGGTTTGGTTAGATCCTATT
                      ____________________________________________________________
consensus             TCTTTGGTGGTCTCTTCAAGTCGAGATCCTTTTGCAACTTCGGTTTGGTTAGATCCTATT
 
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rJMSF015L11+          CCTGAAAAGGGCAATTCACAGCCATAGTCCTCTTCTCTAGATCATCCTATATTCTTGAAA
rJMFF018J19+          CCTGAAAAGGGCAATTCACAGCCATAGTCCTCTTCTCTAGATCATCCTATATTCTTGAAA
rJMSF021I22+          CCTGAAAAGGGCAATTCACAGCCATAGTCCTCTTCTCTAGATCATCCTATATTCTTGAAA
                      ____________________________________________________________
consensus             CCTGAAAAGGGCAATTCACAGCCATAGTCCTCTTCTCTAGATCATCCTATATTCTTGAAA
 
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rJMSF015L11+          GGGCAATTCACCATTTGTATATTCCAGTCCCCCGCTTTTAGGCTCTCTTTTACTCAAAGT
rJMFF018J19+          GGGCAATTCNCCATTTGTATATTCCAGTCCCCCGCTT                       
rJMSF021I22+          GGGCAATTCACCATTTGTATATTCCAGTCCCCCGCTTTTAGGCTCTCTTTTACTCAAAGT
                      ____________________________________________________________
consensus             GGGCAATTCACCATTTGTATATTCCAGTCCCCCGCTTTTAGGCTCTCTTTTACTCAAAGT
 
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rJMSF015L11+          CACAAGAAAGTTTCTTCCTTTTCTTCAGGTCTACAAGGACATCATAGCTAGTGAATGTAA
rJMSF021I22+          CACAAGAAAGTTTCTTCCTTTTCTTCAGGTCTACAAGGACATCATAGCTAGTGAATGTAA
                      ____________________________________________________________
consensus             CACAAGAAAGTTTCTTCCTTTTCTTCAGGTCTACAAGGACATCATAGCTAGTGAATGTAA
 
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rJMSF015L11+          ATGTGGTTTCTTTCTTGCTTTTTTATTTCTCAACTGGAATGGACCAACACCATGT     
rJMSF021I22+          ATGTGGTTTCTTTCTTGCTTTTTTATTTCTCAACTGGAATGGACCAACACCATGTTGATC
                      ____________________________________________________________
consensus             ATGTGGTTTCTTTCTTGCTTTTTTATTTCTCAACTGGAATGGACCAACACCATGTTGATC