Contig 005673:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021H19Sequence642005673 (2)ref|XP_009766141.1|142PREDICTED: uncharacterized protein LOC104217556 [Nicotiana sylvestris]760005673 (2)ref|XP_011031145.1|99.4PREDICTED: uncharacterized protein LOC105130368 [Populus euphratica]

Alignment

This contig is upended


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JMSF021H19-                                                           GGTAATAGCTAG
                      ____________________________________________________________
consensus                                                             GGTAATAGCTAG
 
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JMSF021H19-           CTAGCGACTAGTAAAGGAAAGGCTAAAAGTTGGAACCTTTCCAAGCTAACAACAATGGCA
                      ____________________________________________________________
consensus             CTAGCGACTAGTAAAGGAAAGGCTAAAAGTTGGAACCTTTCCAAGCTAACAACAATGGCA
 
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JMSF021H19-           GCCACTGGAAGACTGCTAAGAACATCAAGGCCGTGTGTGGGTATTGGAAATTCTCAATCT
                      ____________________________________________________________
consensus             GCCACTGGAAGACTGCTAAGAACATCAAGGCCGTGTGTGGGTATTGGAAATTCTCAATCT
 
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JMSF021H19-           TGTTATTCTTTCTATGGTCCAAAAGGCTCTTCTGCTAGATTTGTAAGCAAAGGTGGGTTT
                      ____________________________________________________________
consensus             TGTTATTCTTTCTATGGTCCAAAAGGCTCTTCTGCTAGATTTGTAAGCAAAGGTGGGTTT
 
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JMSF021H19-           GGAGGGGAGAAGGGGATTGGAGATGGTGAAAAACAACCTAAATCAGCAACCAAGGTGGTC
                      ____________________________________________________________
consensus             GGAGGGGAGAAGGGGATTGGAGATGGTGAAAAACAACCTAAATCAGCAACCAAGGTGGTC
 
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JMSF021H19-           GCAGCTGCAGCAACCTCAGCAAGTTGTTTAGTCACTACTCCAGAGCCCAAGACAGAGAAA
                      ____________________________________________________________
consensus             GCAGCTGCAGCAACCTCAGCAAGTTGTTTAGTCACTACTCCAGAGCCCAAGACAGAGAAA
 
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JMSF021H19-           GGGTTGTTGGATTTGGGTTTTTTATTAGGAAAGATCTCAACTTTAATGTTTCAGAGATTG
                      ____________________________________________________________
consensus             GGGTTGTTGGATTTGGGTTTTTTATTAGGAAAGATCTCAACTTTAATGTTTCAGAGATTG
 
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JMSF021H19-           AGAATGATTACCATCAGACTGCCAAAGAAATTGCATGCCCAGATCTTGATGGAGAAGGCT
                      ____________________________________________________________
consensus             AGAATGATTACCATCAGACTGCCAAAGAAATTGCATGCCCAGATCTTGATGGAGAAGGCT
 
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JMSF021H19-           ATAGTAGACTGCCGATTCTTTACTTGGTTTGCAGTTGCAGGGTCTCTGCTAGGTTCAGTT
                      ____________________________________________________________
consensus             ATAGTAGACTGCCGATTCTTTACTTGGTTTGCAGTTGCAGGGTCTCTGCTAGGTTCAGTT
 
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JMSF021H19-           CTGTGCTTTTTTGAGGGTTGTTACATAATCGTGGAATCATATTTCCAGTATTTTCATGCA
rJMSF021H19+                              TTACATAATCGTGGAATCATATTTCCAGTATTTTCATGCA
                      ____________________________________________________________
consensus             CTGTGCTTTTTTGAGGGTTGTTACATAATCGTGGAATCATATTTCCAGTATTTTCATGCA
 
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JMSF021H19-           GTCTCACAACATTCAAACCAAGCCCATCTTGTGCCCCTGTTAATAGAAGCCATTGACATG
rJMSF021H19+          GTCTCACAACATTCAAACCAAGCCCATCTTGTGCCCCTGTTAATAGAAGCCATTGACATG
                      ____________________________________________________________
consensus             GTCTCACAACATTCAAACCAAGCCCATCTTGTGCCCCTGTTAATAGAAGCCATTGACATG
 
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JMSF021H19-           TTTTTGGTAGGAACAGCTATGCTTACATTC                              
rJMSF021H19+          TTTTTGGTAGGAACAGCTATGCTTACATTCGGGATAGGACTGCATGTCATGTTTGTTGGA
                      ____________________________________________________________
consensus             TTTTTGGTAGGAACAGCTATGCTTACATTCGGGATAGGACTGCATGTCATGTTTGTTGGA
 
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rJMSF021H19+          TCAAACAATTCTAAAGACCAAATGCCACATCTTCCAGGCTCACACTTGCTTCCTGCTCTC
                      ____________________________________________________________
consensus             TCAAACAATTCTAAAGACCAAATGCCACATCTTCCAGGCTCACACTTGCTTCCTGCTCTC
 
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rJMSF021H19+          AAGGTAAGAATATTTCATTATTGAGACAACCCAACCAAGTTGATCAGGTTGTTGGCTTGA
                      ____________________________________________________________
consensus             AAGGTAAGAATATTTCATTATTGAGACAACCCAACCAAGTTGATCAGGTTGTTGGCTTGA
 
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rJMSF021H19+          TAATCACTAGGTTCCAAGTTCGACGCCGATTGAGAATGGCCTATTATTGGCCTTCTTGGC
                      ____________________________________________________________
consensus             TAATCACTAGGTTCCAAGTTCGACGCCGATTGAGAATGGCCTATTATTGGCCTTCTTGGC
 
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rJMSF021H19+          TTGAGCTGTTTATGGACAACCTAAGTTGGTTTACCCCGAAAATGATGTTATGGTGATTAT
                      ____________________________________________________________
consensus             TTGAGCTGTTTATGGACAACCTAAGTTGGTTTACCCCGAAAATGATGTTATGGTGATTAT
 
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rJMSF021H19+          TTTTGCGTCTCTTATAGAGTCTCCCGGAGAAGGTTGGAATGCGGTCAGTTATGCAGGCAA
                      ____________________________________________________________
consensus             TTTTGCGTCTCTTATAGAGTCTCCCGGAGAAGGTTGGAATGCGGTCAGTTATGCAGGCAA
 
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rJMSF021H19+          AGTCGAAAATCGGGCATGCTGTGATAATGATACTCCAGGTTGGGGTGCTGGAGAAGTTCA
                      ____________________________________________________________
consensus             AGTCGAAAATCGGGCATGCTGTGATAATGATACTCCAGGTTGGGGTGCTGGAGAAGTTCA
 
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rJMSF021H19+          AAGAAATACCTTTGGTTAGCAGCTTGGATCTTGCTTGTTTCGCCGCAGTTGTGTTTGTTT
                      ____________________________________________________________
consensus             AAGAAATACCTTTGGTTAGCAGCTTGGATCTTGCTTGTTTCGCCGCAGTTGTGTTTGTTT
 
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rJMSF021H19+          CGTCGGCCAGTGTCTTCCTTCTTTCCAAACTTAGCACCGGAACCGCAGCAGCCGATACAT
                      ____________________________________________________________
consensus             CGTCGGCCAGTGTCTTCCTTCTTTCCAAACTTAGCACCGGAACCGCAGCAGCCGATACAT
 
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rJMSF021H19+          AGACAAGAAAAAATGCTAATTATGTATGTGGCTGTCGGAGTGTCGGGAAGCCAAAAGCAC
                      ____________________________________________________________
consensus             AGACAAGAAAAAATGCTAATTATGTATGTGGCTGTCGGAGTGTCGGGAAGCCAAAAGCAC
 
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rJMSF021H19+          TATAGAATAATGGATGTAAATGAGAATAGGAATCATTTATTTTGTTTATTATTCAACATT
                      ____________________________________________________________
consensus             TATAGAATAATGGATGTAAATGAGAATAGGAATCATTTATTTTGTTTATTATTCAACATT