Contig 005671:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039H07Sequence512011597 (3)692005671 (4)emb|CDP15187.1|3e-30unnamed protein product [Coffea canephora]
JMSF012A04Sequence266011597 (3)743005671 (4)ref|XP_009593728.1|2e-48PREDICTED: probable receptor-like protein kinase At5g18500 [Nicotiana tomentosi
JMSF021G10Sequence593005671 (4)emb|CDP15187.1|1e-10unnamed protein product [Coffea canephora]
JMSF036K02Sequence633011597 (3)ref|XP_011039031.1|8e-28PREDICTED: probable receptor-like protein kinase At5g18500 [Populus euphratica]732005671 (4)ref|XP_009593728.1|2e-48PREDICTED: probable receptor-like protein kinase At5g18500 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF036K02+                        ACGCAAATACTGGCCTCTTGAATGAAAAGAGCGATGTTTATAGCTT
                      ____________________________________________________________
consensus                           ACGCAAATACTGGCCTCTTGAATGAAAAGAGCGATGTTTATAGCTT
 
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rJMSF036K02+          NGGGGTTGTGCTTTAGAAGCAATCACCGGAAGAGACCCCGTGGACTATGGCCGTCCTGCT
rJMSF012A04+                      TTAGAAGCAATCACCGGAAGAGACCCCGTGGACTATGGCCGTCCTGCT
                      ____________________________________________________________
consensus             NGGGGTTGTGCTTTAGAAGCAATCACCGGAAGAGACCCCGTGGACTATGGCCGTCCTGCT
 
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rJMSF036K02+          CAAGAGGTGAATCTTGTTGATTGGTTGAAAATGATGGTTGGAAACAGGCGCTCAGAGGAA
rJMSF012A04+          CAAGAGGTGAATCTTGTTGATTGGTTGAAAATGATGGTTGGAAACAGGCGCTCAGAGGAA
rJMFF039H07+                                   TGAAAATGATGGTTGGAAACAGGCGCTCAGAGGAA
                      ____________________________________________________________
consensus             CAAGAGGTGAATCTTGTTGATTGGTTGAAAATGATGGTTGGAAACAGGCGCTCAGAGGAA
 
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rJMSF036K02+          GTAGTGGATCCAAATATTGGGTCAAGGCCATCAACCAGAGCTCTTAAGCGAGCCCTTTTG
rJMSF012A04+          GTAGTGGATCCAAATATTGGGTCAAGGCCATCAACCAGAGCTCTTAAGCGAGCCCTTTTG
rJMFF039H07+          GTAGTGGATCCAAATATTGGGTCAAGGCCATCAACCAGAGCTCTTAAGCGAGCCCTTTTG
                      ____________________________________________________________
consensus             GTAGTGGATCCAAATATTGGGTCAAGGCCATCAACCAGAGCTCTTAAGCGAGCCCTTTTG
 
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rJMSF036K02+          ACCGCTTTGAGATGCGTTGATCCAGATTCTGAGAAGAGACCCAAGATGAGCCAAGTTGCC
rJMSF012A04+          ACCGCTTTGAGATGCGTTGATCCAGATTCTGAGAAGAGACCCAAGATGAGCCAAGTTGCC
rJMFF039H07+          ACCGCTTTGAGATGCGTTGATCCAGATTCTGAGAAGAGACCCAAGATGAGCCAAGTTGCC
rJMSF021G10+                 TGAGATGCGTTGATCCAGATTCTGAGAAGAGACCCANGATGAGCCAAGTTGCC
                      ____________________________________________________________
consensus             ACCGCTTTGAGATGCGTTGATCCAGATTCTGAGAAGAGACCCAAGATGAGCCAAGTTGCC
 
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rJMSF036K02+          CGCATGCTCGAATCTGAGGAATATCCCATACCAAGAGAGGACCGAAGGCAGCGAAGAATC
rJMSF012A04+          CGCATGCTCGAATCTGAGGAATATCCCATACCAAGAGAGGACCGAAGGCAGCGAAGAATC
rJMFF039H07+          CGCATGCTCGAATCTGAGGAATATCCCATACCAAGAGAGGACCGAAGGCAGCGAAGAATC
rJMSF021G10+          CGCATNCTCGAATCTGAGGAATATCCCATNCCAAGAGAGGACCGAAGGCAGCGAAGAATC
                      ____________________________________________________________
consensus             CGCATGCTCGAATCTGAGGAATATCCCATACCAAGAGAGGACCGAAGGCAGCGAAGAATC
 
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rJMSF036K02+          CGAGCAGGTGGTGGCACAGAGAGCGAATCCCAGCACGAGAACTATGATACGGACAAGAGT
rJMSF012A04+          CGAGCAGGTGGTGGCACAGAGAGCGAATCCCAGCACGAGAACTATGATACGGACAAGAGT
rJMFF039H07+          CGAGCAGGTGGTGGCACAGAGAGCGAATCCCAGCACGAGAACTATGATACGGACAAGAGT
rJMSF021G10+          CGAGCAGGTGGTGGCACAGAGAGCGAATCCCAGCACGAGAACTATGATACGGACAAGAGT
                      ____________________________________________________________
consensus             CGAGCAGGTGGTGGCACAGAGAGCGAATCCCAGCACGAGAACTATGATACGGACAAGAGT
 
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rJMSF036K02+          GACAACCCAGATTCGAGATCGGAAAGTAAAAGGAGCGATAACGTGTGACCAGCAAGCAGT
rJMSF012A04+          GACAACCCAGATTCGAGATCGGAAAGTAAAAGGAGCGATAACGTGTGACCAGCAAGCAGT
rJMFF039H07+          GACAACCCAGATTCGAGATCGGAAAGTAAAAGGAGCGATAACGTGTGACCAGCAAGCAGT
rJMSF021G10+          GACAACCCAGATTCGAGATCGGAAAGTAAAAGGAGCGATAACGTGTGACCAGCAAGCAGN
                      ____________________________________________________________
consensus             GACAACCCAGATTCGAGATCGGAAAGTAAAAGGAGCGATAACGTGTGACCAGCAAGCAGT
 
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rJMSF036K02+          GGCTCCACCGATATGACAGCAGGCTAAGCTAGTTCTTACAAAACTCGAGATAATGTGTGA
rJMSF012A04+          GGCTCCACCGATATGACAGCAGGCTAAGCTAGTTCTTACAAAACTCGAGATAATGTGTGA
rJMFF039H07+          GGCTCCACCGATATGACAGCAGGCTAAGCTAGTTCTTACAAAACTCGAGATAATGTGTGA
rJMSF021G10+          GGCTCCNCCGATATGNCAGCAGGNTAAGCTAGTTCTTNCAAAACTCGAGATAATGTGTGA
                      ____________________________________________________________
consensus             GGCTCCACCGATATGACAGCAGGCTAAGCTAGTTCTTACAAAACTCGAGATAATGTGTGA
 
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rJMSF036K02+          TTTATTTGGGTAAGGTGATATTTACTAGTTAAAGTTGGGACTAAGGTTGGGAGTATATGA
rJMSF012A04+          TTTATTTGGGTAAGGTGATATTTACTAGTTAAAGTTGGGACTAAGGTTGGGAGTATATGA
rJMFF039H07+          TTTATTTGGGTAAGGTGATATTTACTAGTTAAAGTTGGGACTAAGGTTGGGAGTATATGA
rJMSF021G10+          TTTATTTGGGTAAGGTGATATTTACTAGNTAAAGTTGGGACTANGGTTGGGAGTATATGA
                      ____________________________________________________________
consensus             TTTATTTGGGTAAGGTGATATTTACTAGTTAAAGTTGGGACTAAGGTTGGGAGTATATGA
 
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rJMSF036K02+          AGATATCAGAGATTGGTGAGACATAGACAGGCTCTTAGTTTCACTTTTTCTAAGTTGGTT
rJMSF012A04+          AGATATCAGAGATTGGTGAGACATAGACAGGCTCTTAGTTTCACTTTTTCTAAGTTGGTT
rJMFF039H07+          AGATATCAGAGATTGGTGAGACATAGACAGGCTCTTAGTTTCACTTTTTCTAAGTTGGTT
rJMSF021G10+          AGATATCAGAGATTGGTGNGACATAGACAGGCTNTTAGTTNCACTTTTTNNANGTTGGTT
                      ____________________________________________________________
consensus             AGATATCAGAGATTGGTGAGACATAGACAGGCTCTTAGTTTCACTTTTTCTAAGTTGGTT
 
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rJMSF036K02+          TTTGTTTTGTTTTCTAAGAGATTGGAAATGCCTTTTGTTGTTTGAAAATAGATAGGAATA
rJMSF012A04+          TTTGTTTTGTTTTCTAAGAGATTGGAAATGCCTTTTGTTGTTTGAAAATAGATAGGAATA
rJMFF039H07+          TTTGTTTTGTTTTCTAAGAGATTGGAAATGCCTTTTGTTGTTTGAAAATAGATAGGAATA
rJMSF021G10+          TTTGTTTTGTNTTCTAAGAGATNGGAAANNCCTTTTGTNGTNTGAAAATAGATAGGAATN
                      ____________________________________________________________
consensus             TTTGTTTTGTTTTCTAAGAGATTGGAAATGCCTTTTGTTGTTTGAAAATAGATAGGAATA
 
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rJMSF036K02+          TGTTTGATTGTGTACAGGAGAAT                                     
rJMSF012A04+          TGTTTGATTGTGTACAGGAGAATTGCCTTAATCTGTTGTA-TTCCATGGTCATGGTTTCT
rJMFF039H07+          TGTTTGATTGTGTACAGGAGAATTGCCTTAATCTGTTGTA-TTCCATGGTCATGGTTTCT
rJMSF021G10+          TGTTTGATNGTGTACAGGAGAATTGCCCTNATCNNTTGNACTTCCCTGGTCATGGTTTCT
                      ____________________________________________________________
consensus             TGTTTGATTGTGTACAGGAGAATTGCCTTAATCTGTTGTA-TTCCATGGTCATGGTTTCT
 
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rJMSF012A04+          GACAATTTTGTTTTCCAACATCCT                                    
rJMFF039H07+          GACAATTTTGTTTTCCAACATCCTTAAAAGCATTGCTTTTAATATCT             
rJMSF021G10+          GACAATTTTNCTTTCCAACATCCTNAAAAGCATTGCTTTTAANATCTNNGTACACATCCC
                      ____________________________________________________________
consensus             GACAATTTTGTTTTCCAACATCCTTAAAAGCATTGCTTTTAATATCTNNGTACACATCCC