Contig 005670:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020I11Sequence476009308 (2)ref|XP_009798569.1|4e-35PREDICTED: mortality factor 4-like protein 1 isoform X4 [Nicotiana sylvestris]754005670 (3)ref|XP_009798546.1|5e-55PREDICTED: nuA4 complex subunit EAF3 homolog isoform X1 [Nicotiana sylvestris]
JMFF020I12Sequence386005670 (3)ref|XP_009588510.1|3e-42PREDICTED: mortality factor 4-like protein 1 isoform X3 [Nicotiana tomentosifor
JMSF021E15Sequence663009308 (2)ref|XP_009798562.1|4e-66PREDICTED: mortality factor 4-like protein 1 isoform X3 [Nicotiana sylvestris]813005670 (3)ref|XP_009798562.1|4e-80PREDICTED: mortality factor 4-like protein 1 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF020I11+                             ACACCAGAGAAAGACAATGCGTCCGCTGAGAAGCTCATCAA
rJMSF021E15+                                   GAGAAAGACAATGCGTCCGCTGAGAAGCTCATCAA
                      ____________________________________________________________
consensus                                ACACCAGAGAAAGACAATGCGTCCGCTGAGAAGCTCATCAA
 
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rJMFF020I11+          GATTTCAAATTCCATTAACTTTAAAGAAGCAACTTGTTGATGATTGGGAGTTCATCACTC
rJMSF021E15+          GA-TTCAAATTCCATTAACTTTAAAGAAGCAACTTGTTGATGATTGGGAGTTCATCACTC
                      ____________________________________________________________
consensus             GATTTCAAATTCCATTAACTTTAAAGAAGCAACTTGTTGATGATTGGGAGTTCATCACTC
 
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rJMFF020I11+          AGCAGAATATGCTTGTAAAACTTCCACGATNCTCCCAGTGTTGATGATATACTGACGAAT
rJMSF021E15+          AGCAGAATATGCTTGTAAAACTTCCACGAT-CTCCCAGTGTTGATGATATACTGACGAAT
                      ____________________________________________________________
consensus             AGCAGAATATGCTTGTAAAACTTCCACGATNCTCCCAGTGTTGATGATATACTGACGAAT
 
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rJMFF020I11+          TACCTTGAACACTGCTCAAAAAAGGATGGCATGATGGCTGAATCAGTTGGAGAAATTCTC
rJMFF020I12+                        CTCAAAAAAGGATGGCATGATGGCTGAATCAGTTGGAGAAATTCTC
rJMSF021E15+          TACCTTGAACACTGCTCAAAAAAGGATGGCATGATGGCTGAATCAGTTGGAGAAATTCTC
                      ____________________________________________________________
consensus             TACCTTGAACACTGCTCAAAAAAGGATGGCATGATGGCTGAATCAGTTGGAGAAATTCTC
 
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rJMFF020I11+          AATGGCATAAGATCGTATTTTGACAAATCATTGCCAGTTATACTTTTGTACAAAAAGGAG
rJMFF020I12+          AATGGCATAAGATCGTATTTTGACAAATCATTGCCAGTTATACTTTTGTACAAAAAGGAG
rJMSF021E15+          AATGGCATAAGATCGTATTTTGACAAATCATTGCCAGTTATACTTTTGTACAAAAAGGAG
                      ____________________________________________________________
consensus             AATGGCATAAGATCGTATTTTGACAAATCATTGCCAGTTATACTTTTGTACAAAAAGGAG
 
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rJMFF020I11+          CGCCAACAATATCATGACACAGTTTCAGATAATGTCTCTCCGTCTAGTGTATATGGAGCT
rJMFF020I12+          CGCCAACAATATCATGACACAGTTTCAGATAATGTCTCTCCGTCTAGTGTATATGGAGCT
rJMSF021E15+          CGCCAACAATATCATGACACAGTTTCAGATAATGTCTCTCCGTCTAGTGTATATGGAGCT
                      ____________________________________________________________
consensus             CGCCAACAATATCATGACACAGTTTCAGATAATGTCTCTCCGTCTAGTGTATATGGAGCT
 
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rJMFF020I11+          GAACATCTGTTGCGCCTATTTGTCAAGTTGCCTGAGCTACTGGCTTGTGTGAAAATTGAA
rJMFF020I12+          GAACATCTGTTGCGCCTATTTGTCAAGTTGCCTGAGNTACTGGCTTGTGTGAAAATTGAA
rJMSF021E15+          GAACATCTGTTGCGCCTATTTGTCAAGTTGCCTGAGCTACTGGCTTGTGTGAAAATTGAA
                      ____________________________________________________________
consensus             GAACATCTGTTGCGCCTATTTGTCAAGTTGCCTGAGCTACTGGCTTGTGTGAAAATTGAA
 
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rJMFF020I11+          GAGGAGACATTAACTAGTTTGCAGCAGAAATTGCTGGATTTCCTCAAATTTCTGCAGAAA
rJMFF020I12+          GAGGAGACATTNANTAGTTTGCAGCAGAAATTGCTGGATTTCCTCAAATTTCNGCAGAAA
rJMSF021E15+          GAGGAGACATTAACTAGTTTGCAGCAGAAATTGCTGGATTTCCTCAAATTTCTGCAGAAA
                      ____________________________________________________________
consensus             GAGGAGACATTAACTAGTTTGCAGCAGAAATTGCTGGATTTCCTCAAATTTCTGCAGAAA
 
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rJMFF020I11+          AATCAGGGCACGTACTTCCTTTCTTCTTACGAAGCATCAAAAGCTTCTGACGGAAGCAGC
rJMFF020I12+          AATCAGGG                                                    
rJMSF021E15+          AATCAGGGCACGTACTTCCTTTCTTCTTACGAAGCATCAAAAGCTTCTGACGGAAGCAGC
                      ____________________________________________________________
consensus             AATCAGGGCACGTACTTCCTTTCTTCTTACGAAGCATCAAAAGCTTCTGACGGAAGCAGC
 
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rJMFF020I11+          AAGGCGAAAGATAGTTGACCAGCGAACCGTTCTTCTGTGCCTAATGTGACTTAGTTTCAG
rJMSF021E15+          AAGGCGAAAGATAGTTGACCAGCGAACCGTTCTTCTGTGCCTAATGTGACTTAGTTTCAG
                      ____________________________________________________________
consensus             AAGGCGAAAGATAGTTGACCAGCGAACCGTTCTTCTGTGCCTAATGTGACTTAGTTTCAG
 
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rJMFF020I11+          CAACTTTCACTAG                                               
rJMSF021E15+          CAACTTTCACTAGGTATTTGACTTACCATGTCTTTACTAATATTAATAGCTGACGTCAAA
                      ____________________________________________________________
consensus             CAACTTTCACTAGGTATTTGACTTACCATGTCTTTACTAATATTAATAGCTGACGTCAAA
 
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rJMSF021E15+          AACAACCCAATCCCCATTTGTAGTTTTGTGTTGTCGCTTTGGTCCTAGATTTCGCACGAG
                      ____________________________________________________________
consensus             AACAACCCAATCCCCATTTGTAGTTTTGTGTTGTCGCTTTGGTCCTAGATTTCGCACGAG
 
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rJMSF021E15+          ATGACTAGATCAGTGTTTGGAGAGAAAGGTACAATCCTTCTTTAGTGTAACAATTAGCTT
                      ____________________________________________________________
consensus             ATGACTAGATCAGTGTTTGGAGAGAAAGGTACAATCCTTCTTTAGTGTAACAATTAGCTT
 
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rJMSF021E15+          AGTAAANGATGTAGTCTTTGTTGTAGCTGATGATTCTTAGTGTCCATGTTGTACCAAATA
                      ____________________________________________________________
consensus             AGTAAANGATGTAGTCTTTGTTGTAGCTGATGATTCTTAGTGTCCATGTTGTACCAAATA