Contig 005669:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005J20Sequence291004915 (2)465005669 (4)ref|XP_009606738.1|3e-46PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom
JMSF009N23Sequence330000668 (4)ref|XP_009761857.1|3e-12PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl673005669 (4)ref|XP_009606738.1|3e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom
JMSF013G08Sequence196000668 (4)648005669 (4)ref|XP_009606738.1|2e-114PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom
JMSF020G15Sequence704000668 (4)ref|XP_009761857.1|2e-76PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana syl753005669 (4)ref|XP_009606738.1|1e-113PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial [Nicotiana tom

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+                                     TTCTGGTTCTGTAGATTTCTCTGGAACACCTAC
rJMSF009N23+                                     TTCTGGTTCTGTAGATTTCTCTGGAACACCTAC
rJMSF020G15+                                     TTCTGGTTCTGTAGATTTCTCTGGAACACCTAC
                      ____________________________________________________________
consensus                                        TTCTGGTTCTGTAGATTTCTCTGGAACACCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          CAGTGCTAGTTTGAACTCCAACTTCCAGGCTCAGCCTGCTGTTCAGAGCTTACCACCTAA
rJMSF009N23+          CAGTGCTAGTTTGAACTCCAACTTCCAGGCTCAGCCTGCTGTTCAGAGCTTACCACCTAA
rJMSF020G15+          CAGTGCTAGTTTGNACTCCAACTTCCAGGCTCAGCCTGCTGTTCAGAGCTTACCACCTAA
                      ____________________________________________________________
consensus             CAGTGCTAGTTTGAACTCCAACTTCCAGGCTCAGCCTGCTGTTCAGAGCTTACCACCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          TCTAAATCACTATTATTGTGTCACGAGAATACAGCACAAAGTTGAAGTGCTAAGAAGATG
rJMSF009N23+          TCTAAATCACTATTATTGTGTCACGAGAATACAGCACAAAGTTGAAGTGCTAAGAAGATG
rJMSF020G15+          TCTAAATCACTATTATTGTGTCACGAGAATACAGCACAAAGTTGAAGTGCTAAGAAGATG
                      ____________________________________________________________
consensus             TCTAAATCACTATTATTGTGTCACGAGAATACAGCACAAAGTTGAAGTGCTAAGAAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          TATACATGCTCTGGATGCCAAGTATGTGATAGCATTTATGAACCATACTAAACAACTGAA
rJMSF009N23+          TATACATGCTCTGGATGCCAAGTATGTGATAGCATTTATGAACCATACTAAACAACTGAA
rJMSF020G15+          TATACATGCTCTGGATGCCAAGTATGTGATAGCATTTATGAACCATACTAAACAACTGAA
                      ____________________________________________________________
consensus             TATACATGCTCTGGATGCCAAGTATGTGATAGCATTTATGAACCATACTAAACAACTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          AGACGCTGTTTTTAAACTAGAAGCTCGTGGTATGAAAGCTGCAGAACTACATGGTGACCT
rJMSF009N23+          AGACGCTGTTTTTAAACTAGAAGCTCGTGGTATGAAAGCTGCAGAACTACATGGTGACCT
rJMSF020G15+          AGACGCTGTTTTTAAACTAGAAGCTCGTGGTATGAAAGCTGCAGAACTACATGGTGACCT
                      ____________________________________________________________
consensus             AGACGCTGTTTTTAAACTAGAAGCTCGTGGTATGAAAGCTGCAGAACTACATGGTGACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          TAGCAAATTAATGAGATCAACCATTTTAAAGGACTTCAGAAATGGAGAGGTCAGAGTGCT
rJMSF009N23+          TAGCAAATTAATGAGATCAACCATTTTAAAGGACTTCAGAAATGGAGAGGTCAGAGTGCT
rJMSF005J20+                                 TTTTAAAGGACTTCAGAAATGGAGAGGTCAGAGTGCT
rJMSF020G15+          TAGCAAATTAATGAGATCAACCATTTTAAAGGACTTCAGAAATGGAGAGGTCAGAGTGCT
                      ____________________________________________________________
consensus             TAGCAAATTAATGAGATCAACCATTTTAAAGGACTTCAGAAATGGAGAGGTCAGAGTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          GCTGACAAGTGAACTTTCTGCTAGAGGTTTGGATGTGCCAGAATGTGATCTTGTAGTGAA
rJMSF009N23+          GCTGACAAGTGAACTTTCTGCTAGAGGTTTGGATGTGCCAGAATGTGATCTTGTAGTGAA
rJMSF005J20+          GCTGACAAGTGAACTNTCTGCTAGAGGTTTGGANGTGCCAGAATGTGATCTTGTAGTGAA
rJMSF020G15+          GCTGACAAGTGAACTTTCTGCTAGAGGTTTGGATGTGCCAGAATGTGATCTTGTAGTGAA
                      ____________________________________________________________
consensus             GCTGACAAGTGAACTTTCTGCTAGAGGTTTGGATGTGCCAGAATGTGATCTTGTAGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          TCTGGAATTACCTACTGACTCAATTCATTACGCACATAGAGCTGGCCGTACAGGCCGGCT
rJMSF009N23+          TCTGGAATTACCTACTGACTCAATTCATTACGCACATAGAGCTGGCCGTACAGGCCGGCT
rJMSF005J20+          TCTGGAATTACCTACTGACTCAATTCATTACGCACATAGAGCTGGCCGTACAGGCCGGCT
rJMSF020G15+          TCTGGAATTACCTACTGACTCAATTCATTACGCACATAGAGCTGGCCGTACAGGCCGGCT
                      ____________________________________________________________
consensus             TCTGGAATTACCTACTGACTCAATTCATTACGCACATAGAGCTGGCCGTACAGGCCGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          TGGACGAAAGGGTAATGTGGTCACCATATGTGAGGAACCAGAAGTTTTTGTTGTAAGAAA
rJMSF009N23+          TGGACGAAAGGGTAATGTGGTCACCATATGTGAGGAACCAGAAGTTTTTGTTGTAAGAAA
rJMSF005J20+          TGGACGAAAGGGTAATGTGGTCACCATATGTGAGGAACCAGAAGTTTTTGTTGTANGAAA
rJMSF020G15+          TGGACGAAAGGGTAATGTGGTCACCATATGTGAGGAACCAGAAGTTTTTGTTGTAAGAAA
                      ____________________________________________________________
consensus             TGGACGAAAGGGTAATGTGGTCACCATATGTGAGGAACCAGAAGTTTTTGTTGTAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          GTTACAGAAGCAGCTCAGTATCTCCATTCAAAGTTGTGAGTTTGCTGAAGGAAAACTAGT
rJMSF009N23+          GTTACAGAAGCAGCTCAGTATCTCCATTCAAAGTTGTGAGTTTGCTGAAGGAAAACTAGT
rJMSF005J20+          GTTACAGAAGCAGCTCAGTATCTCCATTCAAAGTTGNGAGTTTGCTGAAGGAAAACTAGT
rJMSF020G15+          GTTACAGAAGCAGCTCAGTATCTCCATTCAAAGTTGTGAGTTTGCTGAAGGAAAACTAGT
                      ____________________________________________________________
consensus             GTTACAGAAGCAGCTCAGTATCTCCATTCAAAGTTGTGAGTTTGCTGAAGGAAAACTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013G08+          TATTACTAAAGACGAATAAAGTAGGTAGATTATAGAGGTAAAAGTAGTTCTTCT      
rJMSF009N23+          TATTACTAAAGACGAATAAAGTAGGTAGATTATAGAGGTAAAAGTAGTTCTTCTATGTGT
rJMSF005J20+          TATTNCTAAAGACGAATAAAGTAGGTAGATTATAGAGGTAAAAGTAGTTCTTCTNNGTGT
rJMSF020G15+          TATTACTAAAGACGAATAAAGTAGGTAGATTATAGAGGTAAAAGTAGTTCTTCTATGTGT
                      ____________________________________________________________
consensus             TATTACTAAAGACGAATAAAGTAGGTAGATTATAGAGGTAAAAGTAGTTCTTCTATGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009N23+          TGAATTTGTAAGAGATTGTATGAAAGCAATTGAACAACTT                    
rJMSF005J20+          TGAATCTGTAAGNGATTGTATGAAAGCAATNGAACAACTTCATTTTGCTNGAATCTTAAC
rJMSF020G15+          TGAATTTGTAAGAGATTGTATGAAAGCAATTGAACAACTTCATTTTGCTAGAATCTTAAC
                      ____________________________________________________________
consensus             TGAATTTGTAAGAGATTGTATGAAAGCAATTGAACAACTTCATTTTGCTAGAATCTTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF005J20+          TTCNNCAGTTGAATATTTTGTTGGCTAGTCTATGGATATTCT                  
rJMSF020G15+          TTCAGCAGTTGAATATTTTGTTGGCTAGTCTATGGATATTCTTATTGATGGGTGAGATCT
                      ____________________________________________________________
consensus             TTCAGCAGTTGAATATTTTGTTGGCTAGTCTATGGATATTCTTATTGATGGGTGAGATCT