Contig 005668:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF020B20-                                                 GTGGCGGCATTGGCTTTCAACT
JMSF037E22-                                                         ATTGGCTTTCAACT
                      ____________________________________________________________
consensus                                                   GTGGCGGCATTGGCTTTCAACT
 
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JMSF020B20-           GCTTCTCCTCTCTTCTCTCTCTAGGGTTTTTTTCTCTGCCTAGAATAGTAGAATCTCTTT
JMSF037E22-           GCTTCTCCTCTCTTCTCTCTCTAGGGTTTTTTTCTCTGCCTAGAATAGTAGAATCTCTTT
                      ____________________________________________________________
consensus             GCTTCTCCTCTCTTCTCTCTCTAGGGTTTTTTTCTCTGCCTAGAATAGTAGAATCTCTTT
 
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JMSF020B20-           ATTCAGTATTCTATTCTCATTGCCGTTGTTGTTACGCTTAGTTGTTCAGATCTGACTTGC
JMSF037E22-           ATTCAGTATTCTATTCTCATTGCCGTTGTTGTTACGCTTAGTTGTTCAGATCTGACTTGC
                      ____________________________________________________________
consensus             ATTCAGTATTCTATTCTCATTGCCGTTGTTGTTACGCTTAGTTGTTCAGATCTGACTTGC
 
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JMSF020B20-           TTCCACCGAGGCTTCGATTTCGTCTCCAGAGTTTCCAACTATGGTTCCACCTATTGAAAC
JMSF037E22-           TTCCACCGAGGCTTCGATTTCGTCTCCAGAGTTTCCAACTATGGTTCCACCTATTGAAAC
                      ____________________________________________________________
consensus             TTCCACCGAGGCTTCGATTTCGTCTCCAGAGTTTCCAACTATGGTTCCACCTATTGAAAC
 
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JMSF020B20-           ACCAAACAAAGCTCCCAAGGCCATTATGTCCGCGCATCCACCACTTAATGAAAGGATACT
JMSF037E22-           ACCAAACAAAGCTCCCAAGGCCATTATGTCCGCGCATCCACCACTTAATGAAAGGATACT
                      ____________________________________________________________
consensus             ACCAAACAAAGCTCCCAAGGCCATTATGTCCGCGCATCCACCACTTAATGAAAGGATACT
 
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JMSF020B20-           ATCTTCCATGACTCGGAGATCAGTTGCTGCCCATCCTTGGCATGATCTTGAGATAGGGCC
JMSF037E22-           ATCTTCCATGACTCGGAGATCAGTTGCTGCCCATCCTTGGCATGATCTTGAGATAGGGCC
                      ____________________________________________________________
consensus             ATCTTCCATGACTCGGAGATCAGTTGCTGCCCATCCTTGGCATGATCTTGAGATAGGGCC
 
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JMSF020B20-           TGAAGCTCCAAAGGTTTTCAATGTGGTAATTGAGATCAGCAAGGGGGGTAAGGTGAAGTA
JMSF037E22-           TGAAGCTCCAAAGGTTTTCAATGTGGTAATTGAGATCAGCAAGGGGGGTAAGGTGAAGTA
rJMSF037E22+                                        TGAGATCAGCAAGGGGGGTAAGGGGAAGTA
rJMSF020B20+           GAAGCTCCAAAGGTTTTCAATGTGGTAATTGAGATCAGCAAGGGGGGTAAGGTGAAGTA
                      ____________________________________________________________
consensus             TGAAGCTCCAAAGGTTTTCAATGTGGTAATTGAGATCAGCAAGGGGGGTAAGGTGAAGTA
 
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JMSF020B20-           TGAATTGGATAAGAAGACTGGACTTATCAAGGTTGATCGTGTGCTTTACTCGTCAGTTGT
JMSF037E22-           TGAATTGGATAAGAAGACTGGACTTATCAAGGTTGATCGTGTGCTTTACTCGTCAGTTGT
rJMSF037E22+          TGAANTGGATAAGAAGACTGGACTTATCAAGGNTGATCGTGTGCTTTACTCGTCAGTTGT
rJMSF042C04+                                       AGGTTGATCGTGTGCTTTACTCGTCAGTTGT
rJMSF020B20+          TGAATTGGATAAGAAGACTGGACTTATCAAGGTTGATCGTGTGCTTTACTCGTCAGTTGT
                      ____________________________________________________________
consensus             TGAATTGGATAAGAAGACTGGACTTATCAAGGTTGATCGTGTGCTTTACTCGTCAGTTGT
 
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JMSF020B20-           CTACCCCCATAACTATGGTTTCATCCCTCGTACTATTTGTGAAGACAGTGACCCTATGGA
JMSF037E22-           CTACCCCCATAACTATGGTTTCATCCCTCGTACTATTTGTGAAGACAGTGACCCTATGGA
rJMSF037E22+          CTACCCCCATAACTATGGTTTCATCCCTCGTACTATTTGTGAAGACAGTGACCCTATGGA
rJMSF042C04+          CTACCCCCATAACTATGGTTTCATCCCTCGTACTATTTGTGAAGACAGTGACCCTATGGA
rJMSF020B20+          CTACCCCCATAACTATGGTTTCATCCCTCGTACTATTTGTGAAGACAGTGACCCTATGGA
                      ____________________________________________________________
consensus             CTACCCCCATAACTATGGTTTCATCCCTCGTACTATTTGTGAAGACAGTGACCCTATGGA
 
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JMSF020B20-           TGTTTTAGTTATCATGCAGGAACCTATCCTTCCAGGCTGCTTTCTCCGGGCCAGAGCAAT
JMSF037E22-           TGTTTTAGTTATCATGCAGGAACCTATCCTTCCAGGCTGCTTTCTCCGGGCCAGAGCAAT
rJMSF037E22+          TGTTTTAGTTATCATGCAGGAACCTATCCTTCCAGGCTGCTTTCTCCGGGCCAGAGCAAT
rJMSF042C04+          TGTTTTAGTTATCATGCAGGAACCTATCCTTCCAGGCTGCTTTCTCCGGGCCAGAGCAAT
rJMSF020B20+          TGTTTTAGTTATCATGCAGGAACCTATCCTTCCAGGCTGCTTTCTCCGGGCCAGAGCAAT
                      ____________________________________________________________
consensus             TGTTTTAGTTATCATGCAGGAACCTATCCTTCCAGGCTGCTTTCTCCGGGCCAGAGCAAT
 
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JMSF020B20-           TGGCCTTATGCCCATGATTGATCAGGGAGAAAAAGATGACAAGATAATTGCAGTGTGTGC
JMSF037E22-           TGGCCTTATGCCCATGATTGATCAGGGAGAAAAAGATGACAAGATAATTGCAGTGTGTGC
rJMSF037E22+          TGGCCTTATGCCCATGATTGATCAGGGAGAAAAAGATGACAAGATAATTGCAGTGTGTGC
rJMSF042C04+          TGGCCTTATGCCCATGATTGATCAGGGAGAAAAAGATGACAAGATAATTGCAGTGTGTGC
rJMSF020B20+          TGGCCTTATGCCCATGATTGATCAGGGAGAAAAAGATGACAAGATAATTGCAGTGTGTGC
                      ____________________________________________________________
consensus             TGGCCTTATGCCCATGATTGATCAGGGAGAAAAAGATGACAAGATAATTGCAGTGTGTGC
 
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JMSF020B20-           TGATGACCCTGAGTACAGACACTACACAGACATCAAGGAGCTTCCACCACATCGTTTGGC
JMSF037E22-           TGATGACCCTGAGTACAGACACTACACAGACATCANGGAGCTTCCACCACATCGTTTGGC
rJMSF037E22+          TGATGACCCTGAGTACAGACACTACACAGACATCAAGGAGCTTCCACCACATCGTTTGGC
rJMSF042C04+          TGATGACCCTGAGTACAGACACTACACAGACATCAAGGAGCTTCCACCACATCGTTTGGC
rJMSF020B20+          TGATGACCCTGAGTACAGACACTACACAGACATCAAGGAGCTTCCACCACATCGTTTGGC
                      ____________________________________________________________
consensus             TGATGACCCTGAGTACAGACACTACACAGACATCAAGGAGCTTCCACCACATCGTTTGGC
 
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JMSF020B20-           TGAGA                                                       
JMSF037E22-           TGAGA                                                       
rJMSF037E22+          TGAGATCCGCCGCTTCTTTGAGGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTTAA
rJMSF042C04+          TGAGATCCGCCGCTTCTTTGAGGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTTAA
rJMSF020B20+          TGAGATCCGCCGCTTCTTTGAGGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTTAA
                      ____________________________________________________________
consensus             TGAGATCCGCCGCTTCTTTGAGGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTTAA
 
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rJMSF037E22+          TGACTTTCTACCAGCATCTGATGCCTATGAAGCCATCCAGCATTCCATGAATCTCTATGC
rJMSF042C04+          TGACTTTCTACCAGCATCTGATGCCTATGAAGCCATCCAGCATTCCATGAATCTCTATGC
rJMSF020B20+          TGACTTTCTACCAGCATCTGATGCCTATGAAGCCATCCAGCATTCCATGAATCTCTATGC
                      ____________________________________________________________
consensus             TGACTTTCTACCAGCATCTGATGCCTATGAAGCCATCCAGCATTCCATGAATCTCTATGC
 
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rJMSF037E22+          GGATTATGTTGTGGAAAGCCTGAGGCGATAGTTCACTTGGAAAATGAAGGGTGGTGGATG
rJMSF042C04+          GGATTATGTTGTGGAAAGCCTGAGGCGATAGTTCACTTGGAAAATGAAGGGTGGTGGATG
rJMSF020B20+          GGATTATGTTGTGGAAAGCCTGAGGCGATAGTTCACTTGGAAAATGAAGGGTGGTGGATG
                      ____________________________________________________________
consensus             GGATTATGTTGTGGAAAGCCTGAGGCGATAGTTCACTTGGAAAATGAAGGGTGGTGGATG
 
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rJMSF037E22+          ACATATTCATACAATATATACAAATACTCCTATCTAAAAGCTTTGCGTATTTTACATTGT
rJMSF042C04+          ACATATTCATACAATATATACAAATACTCCTATCTAAAAGCTTTGCGTATTTTACATTGT
rJMSF020B20+          ACATATTCATACAATATATACAAATACTCCTATCTAAAAGCTTTGCGTATTTTACATTGT
                      ____________________________________________________________
consensus             ACATATTCATACAATATATACAAATACTCCTATCTAAAAGCTTTGCGTATTTTACATTGT
 
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rJMSF037E22+          GCATATACCTTGCCTGGAAGATTTCCCCGTCTACATTGAGAGGATGTCTTCTGCTATGGT
rJMSF042C04+          GCATATACCTTGCCTGGAAGATTTCCCCGTCTACATTGAGAGGATGTCTTCTGCTATGGT
rJMSF020B20+          GCATATACCTTGCCTGGAAGATTTCCCCGTCTACATTGAGAGGATGTCTTCTGCTATGGT
                      ____________________________________________________________
consensus             GCATATACCTTGCCTGGAAGATTTCCCCGTCTACATTGAGAGGATGTCTTCTGCTATGGT
 
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rJMSF037E22+          TCTATATATAAATTTTGAAACACTTTCCAAGTTCTAATTAGTCTCAGTGGCAAGCTATGA
rJMSF042C04+          TCTATATATAAATTTTGAAACACTTTCCAAGTTCTAATTAGTCTCAGTGGCAAGCTATGA
rJMSF020B20+          TCTATATATAAATTTTGAAACACTTTCCAAGTTCTAATTAGTCTCAGTGGCAAGCTATGA
                      ____________________________________________________________
consensus             TCTATATATAAATTTTGAAACACTTTCCAAGTTCTAATTAGTCTCAGTGGCAAGCTATGA
 
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rJMSF037E22+          CTGTATTATTTGATTATTTGGTACTCCGTATTT                           
rJMSF042C04+          CTGTATTATTTGATTATTTGGTACTCCGTATTTTGTACCCTAT                 
rJMSF020B20+          CTGTATTATTTGATTATTTGGTACTCCGTATTTTGTACCCTATTGTTATAACCAATGCTA
                      ____________________________________________________________
consensus             CTGTATTATTTGATTATTTGGTACTCCGTATTTTGTACCCTATTGTTATAACCAATGCTA