Contig 005663:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017P07+                                     AAGTGGTTCGCCACGTGTTGGATTCTCTCGAAG
                      ____________________________________________________________
consensus                                        AAGTGGTTCGCCACGTGTTGGATTCTCTCGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+                                                      TTTCTTGCCCATTTAT
rJMSF017P07+          TTCCAGTAGATTATCTTTCCAGGATGACTTGGATGACTCTGATTTTTCTTGCCCATTTAT
                      ____________________________________________________________
consensus             TTCCAGTAGATTATCTTTCCAGGATGACTTGGATGACTCTGATTTTTCTTGCCCATTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          CGTTGACGATGTTGATACTTCTGATTCCCAATTCAGCAGCCAAAACCNTAATGCCAAGAA
rJMSF017P07+          CGTTGACGATTTTGATACTTCTGATTCCCAATTCAGCAGCCAAAACCCTAATGCCAAGAA
                      ____________________________________________________________
consensus             CGTTGACGATTTTGATACTTCTGATTCCCAATTCAGCAGCCAAAACCCTAATGCCAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          GGATTCAGAATCTTCTTCACAAGCATTTCAGGGAAGCAGAAAATCACAGGATGCTGCTGT
rJMSF017P07+          GGATTCAGAATCTTCTTCACAAGCATTTCAGGGAAGCAGAAAATCACAGGATGCTGCTGT
                      ____________________________________________________________
consensus             GGATTCAGAATCTTCTTCACAAGCATTTCAGGGAAGCAGAAAATCACAGGATGCTGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          GGGTGCCCTTGTTCAAATGCTCAAGAATGCTCCTCCATTACGTCAAGATTCTAGCTGCCA
rJMSF017P07+          GGGTGCCCTTGTTCAAATGCTCAAGAATGCTCCTCCATTACGTCAAGATTCTAGCTGCCA
                      ____________________________________________________________
consensus             GGGTGCCCTTGTTCAAATGCTCAAGAATGCTCCTCCATTACGTCAAGATTCTAGCTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          CTCCGTAAAGACTGAACTGGTGGGAGGAATTGGCGCTGTTTCCGAGTTCTCTGGTTCTCG
rJMSF017P07+          CTCCGTAAAGACTGAACTGGTGGGAGGAATTGGCGCTGTTTCCGAGTTCTCTGGTTCTCG
                      ____________________________________________________________
consensus             CTCCGTAAAGACTGAACTGGTGGGAGGAATTGGCGCTGTTTCCGAGTTCTCTGGTTCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          GAAGACTTTGGATGCATTGGAGGAGCTCAAAGCTTACAAAGAATTGAAGGAACTTATTCT
rJMSF017P07+          GAAGACTTTGGATGCATTGGAGGAGCTCAAAGCTTACAAAGAATTGAAGGAACTTATTCT
                      ____________________________________________________________
consensus             GAAGACTTTGGATGCATTGGAGGAGCTCAAAGCTTACAAAGAATTGAAGGAACTTATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          TTCCAAGAGTGCAACCAGAACCAGCTCAGTCAGCAAGAGCTAAACTCAGCCTGCAGAACT
rJMSF017P07+          TTCCAAGAGTGCAACCAGAACCAGCTCAGTCAGCAAGAGCTAAACTCAGCCTGCAGAACT
                      ____________________________________________________________
consensus             TTCCAAGAGTGCAACCAGAACCAGCTCAGTCAGCAAGAGCTAAACTCAGCCTGCAGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          ATGATGCATATACTCCACTTTCACACTGCTACATGGCAATAGGACTTGAGACGGTTGATC
rJMSF017P07+          ATGATGCATATACTCCACTTTCACACTGCTACATGGCAATAGGACTTGAGACGGTTGATC
                      ____________________________________________________________
consensus             ATGATGCATATACTCCACTTTCACACTGCTACATGGCAATAGGACTTGAGACGGTTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          TATAACCTAACCAGGTAGGTATTAGTGGATTGTGTACAATGTATATAGCTGCTGACACAG
rJMSF017P07+          TATAACCTAACCAGGTAGGTATTAGTGGATTGTGTACAATGTATATAGCTGCTGACACAG
                      ____________________________________________________________
consensus             TATAACCTAACCAGGTAGGTATTAGTGGATTGTGTACAATGTATATAGCTGCTGACACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          GAAAATGTTGTATTTGCTTAGCAAGAATGGTTTGCATCTGGCAAACATCATGAAAGTTGT
rJMSF017P07+          GAAAATGTTGTATTTGCTTAGCAAGAATGGTTTGCATCTGGCAAACATCATGAAAGTTGT
                      ____________________________________________________________
consensus             GAAAATGTTGTATTTGCTTAGCAAGAATGGTTTGCATCTGGCAAACATCATGAAAGTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF034F08+          CATAGCATTNGAATCATCC                                         
rJMSF017P07+          CATAGCATTTGAATCATCCTACATTCCTACCACATAGATAAGCCAGAAATACTGTCTTGT
                      ____________________________________________________________
consensus             CATAGCATTTGAATCATCCTACATTCCTACCACATAGATAAGCCAGAAATACTGTCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017P07+          GTATATTAGATCTCATGATCTACACAATATGATGAGAGAGGGTGTTCTTTCATCATCATG
                      ____________________________________________________________
consensus             GTATATTAGATCTCATGATCTACACAATATGATGAGAGAGGGTGTTCTTTCATCATCATG