Contig 005662:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017L12Sequence479005662 (2)ref|XP_010666937.1|2e-31PREDICTED: E3 ubiquitin-protein ligase CHIP [Beta vulgaris subsp. vulgaris]722005662 (2)ref|XP_010666937.1|5e-102PREDICTED: E3 ubiquitin-protein ligase CHIP [Beta vulgaris subsp. vulgaris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-                                 GGCGTCATCCCTTTCGTCTCCTCTGTGTCTTCCATTTC
                      ____________________________________________________________
consensus                                   GGCGTCATCCCTTTCGTCTCCTCTGTGTCTTCCATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           ATTATCGCCAAGAATCAAATCTGGAAACCTCGGGAGAGAACCACATAGCCCGCGCCCGCC
                      ____________________________________________________________
consensus             ATTATCGCCAAGAATCAAATCTGGAAACCTCGGGAGAGAACCACATAGCCCGCGCCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           CGTAACACATTTTCAAGTTTTTCAAAAATTTTCAAAGCCCATAAACCGTTTGCGTTTTTT
rJMSF017L12+                                                                    TT
                      ____________________________________________________________
consensus             CGTAACACATTTTCAAGTTTTTCAAAAATTTTCAAAGCCCATAAACCGTTTGCGTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           CCTCAATAAGTTTTTCGATCATTTCTTCCGTTCACAACTTCTCTATCTGTGCATTCAGAG
rJMSF017L12+          CCTCAATAAGTTTTTCGATCATTTCTTCCGTTCACAACTTCTCTATCTGTGCATTCAGAG
                      ____________________________________________________________
consensus             CCTCAATAAGTTTTTCGATCATTTCTTCCGTTCACAACTTCTCTATCTGTGCATTCAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           GGATACGGACGCAGAGATAGCGGGGTTGGGGTTACGCGGCTTCCGGATTCAAAATGGCAC
rJMSF017L12+          GGATACGGACGCAGAGATAGCGGGGTTGGGGTTACGCGGCTTCCGGATTCAAAATGGCAC
                      ____________________________________________________________
consensus             GGATACGGACGCAGAGATAGCGGGGTTGGGGTTACGCGGCTTCCGGATTCAAAATGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           CGACGGGGGCTGTCACGGCAATGGTCAAACAGGCGGAGCAGCTCAGGCAAGACGGCAACA
rJMSF017L12+          CGACGGGGGCTGTCACGGCAATGGTCAAACAGGCGGAGCAGCTCAGGCAAGACGGCAACA
                      ____________________________________________________________
consensus             CGACGGGGGCTGTCACGGCAATGGTCAAACAGGCGGAGCAGCTCAGGCAAGACGGCAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           ATTACTTCCAGAAGAACCGATTTGGGGCCGCCATCGATGCCTATACCGAGGCGATTACTT
rJMSF017L12+          ATTACTTCCAGAAGAACCGATTTGGGGCCGCCATCGATGCCTATACCGAGGCGATTACTT
                      ____________________________________________________________
consensus             ATTACTTCCAGAAGAACCGATTTGGGGCCGCCATCGATGCCTATACCGAGGCGATTACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           TGTGCCCTAATGTTCCTGTGTATTGGACTAATCGTGCTTTGTGCCATCTCAAACGGAAGG
rJMSF017L12+          TGTGCCCTAATGTTCCTGTGTATTGGACTAATCGTGCTTTGTGCCATCTCAAACGGAAGG
                      ____________________________________________________________
consensus             TGTGCCCTAATGTTCCTGTGTATTGGACTAATCGTGCTTTGTGCCATCTCAAACGGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017L12-           ATTGGACAAGATTGGAAGAGG                                       
rJMSF017L12+          ATTGGACAAGATTGGAAGAGGATTGTAGGAGAGCAATTCAGCTAGACTGTAATACTGTTA
                      ____________________________________________________________
consensus             ATTGGACAAGATTGGAAGAGGATTGTAGGAGAGCAATTCAGCTAGACTGTAATACTGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017L12+          AGGCCCATTATATGCTAGGTCTTGCATTACTAAGGAAGCAAGCGTATTCTGAAGGAGTCA
                      ____________________________________________________________
consensus             AGGCCCATTATATGCTAGGTCTTGCATTACTAAGGAAGCAAGCGTATTCTGAAGGAGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017L12+          GAGAATTGGAAAAAGCATTGGATCTTGGAAGAGGTGCTAATCCTAAGAGTTACATGGTAG
                      ____________________________________________________________
consensus             GAGAATTGGAAAAAGCATTGGATCTTGGAAGAGGTGCTAATCCTAAGAGTTACATGGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017L12+          AGGAGATCTGGCAAGAGCTTGCAAAAGCCAAATATTTGGAGTGGGAACATGAATCTGCCA
                      ____________________________________________________________
consensus             AGGAGATCTGGCAAGAGCTTGCAAAAGCCAAATATTTGGAGTGGGAACATGAATCTGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017L12+          AGCGCAGTTCTGAACTCTATAAATTGAAAGAATCCTGTGAGACAGCTCTTAAGGAGAAAC
                      ____________________________________________________________
consensus             AGCGCAGTTCTGAACTCTATAAATTGAAAGAATCCTGTGAGACAGCTCTTAAGGAGAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017L12+          ATTTACTTAATATCTCACAGATGGAAGGTTTTTTAGATGAAAAGGAAGACTTTTATTCAA
                      ____________________________________________________________
consensus             ATTTACTTAATATCTCACAGATGGAAGGTTTTTTAGATGAAAAGGAAGACTTTTATTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017L12+          AACAACTTGAAGCTTTGAATGAAGTGTTCAGGAAAGCTTCAATTTTGTGTATGATTGCTC
                      ____________________________________________________________
consensus             AACAACTTGAAGCTTTGAATGAAGTGTTCAGGAAAGCTTCAATTTTGTGTATGATTGCTC