Contig 005661:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052K21+                                       AAGCAATGCCCTTGTTTACAGAACAGTACTT
                      ____________________________________________________________
consensus                                          AAGCAATGCCCTTGTTTACAGAACAGTACTT
 
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rJMSF052K21+          GCTGTGAAAAATATTGTGGGTGTTCAAAAAGCTGTAAAAATCGGTTCCGTGGGTGCCACT
                      ____________________________________________________________
consensus             GCTGTGAAAAATATTGTGGGTGTTCAAAAAGCTGTAAAAATCGGTTCCGTGGGTGCCACT
 
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rJMSF052K21+          GTGCAAAGAGTCAATGCAGAAGTCGGCAATGCCCATGCTTTGCTGCTGGACGAGAATGTG
                      ____________________________________________________________
consensus             GTGCAAAGAGTCAATGCAGAAGTCGGCAATGCCCATGCTTTGCTGCTGGACGAGAATGTG
 
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rJMSF052K21+          ATCCAGATGTTTGCCGAAATTGTTGGGTTAGCTGTGGGGATGCTTCACTGGGTGAACCGC
                      ____________________________________________________________
consensus             ATCCAGATGTTTGCCGAAATTGTTGGGTTAGCTGTGGGGATGCTTCACTGGGTGAACCGC
 
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rJMSF052K21+          CTAGGCAAGGAGATGGTCAGTGTGGTAACATGAGGCTGCTTCTGAGGCAGCAACAACGGA
                      ____________________________________________________________
consensus             CTAGGCAAGGAGATGGTCAGTGTGGTAACATGAGGCTGCTTCTGAGGCAGCAACAACGGA
 
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JMSF017H18-                                             TGCCTTTCTGAAGAATCCTGTGAACA
rJMSF052K21+          TCCTCTTGGCAAAATCTGATGTAGCCGGATGGGGTGCCTTTNTGAAGAATCCTGTGAACA
rJMSF017H18+                                            TGCCTTTCTGAAGAATCCTGTGAACA
                      ____________________________________________________________
consensus             TCCTCTTGGCAAAATCTGATGTAGCCGGATGGGGTGCCTTTCTGAAGAATCCTGTGAACA
 
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JMSF017H18-           AAAATGATTACCTGGGAGAATATACAGGTGAGTTGATCTCACATCGAGAAGCAGATAAGC
rJMSF052K21+          AAAATGATTACCTGGGAGAATATACAGGTGAGTTGATCTCACATCGAGAAGCAGATAAGC
rJMSF017H18+          AAAATGATTACCTGGGAGAATATACAGGTGAGTTGATCTCACATCGAGAAGCAGATAAGC
                      ____________________________________________________________
consensus             AAAATGATTACCTGGGAGAATATACAGGTGAGTTGATCTCACATCGAGAAGCAGATAAGC
 
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JMSF017H18-           GTGGGAAAATCTATGACCGGGCAAATTCCTCCTTCCTTTTCGACTTGAATGACCAGTTTG
rJMSF052K21+          GTGGGAAAATCTATGACCGGGCAAATTCCTCCTTCCTTTTCGACTTGAATGACCAGTTTG
rJMSF017H18+          GTGGGAAAATCTATGACCGGGCAAATTCCTCCTTCCTTTTCGACTTGAATGACCAGTTTG
                      ____________________________________________________________
consensus             GTGGGAAAATCTATGACCGGGCAAATTCCTCCTTCCTTTTCGACTTGAATGACCAGTTTG
 
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JMSF017H18-           TGCTTGATGCGTACCGCAAAGGAGATAAGCTGAAATTTGCAAATCACTCGTCGAATCCAA
rJMSF052K21+          TGCTTGATGCGTACCGCAAAGGAGATAAGCTGAAATTTGCAAATCACTCGTCGAATCCAA
rJMSF017H18+          TGCTTGATGCGTACCGCAAAGGAGATAAGCTGAAATTTGCAAATCACTCGTCGAATCCAA
                      ____________________________________________________________
consensus             TGCTTGATGCGTACCGCAAAGGAGATAAGCTGAAATTTGCAAATCACTCGTCGAATCCAA
 
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JMSF017H18-           ACTGTTATGCCAAGGTAATGCTGGTAGCGGGTGATCACCGAGTTGGCATATTTGCGAAGG
rJMSF052K21+          ACTGTTATGCCAAGGTAATGCTGGTAGCGGGTGATCACCGAGTTGGCATATTTGCGAAGG
rJMSF017H18+          ACTGTTATGCCAAGGTAATGCTGGTAGCGGGTGATCACCGAGTTGGCATATTTGCGAAGG
                      ____________________________________________________________
consensus             ACTGTTATGCCAAGGTAATGCTGGTAGCGGGTGATCACCGAGTTGGCATATTTGCGAAGG
 
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JMSF017H18-           ATCGTATTGAAGCAGCTGAGGAGCTTTTCTACGATTACCGATATGGCCCTGATCAAGCGC
rJMSF052K21+          ATCGTATTGAAGCAGCTGAGGAGCTTTTCTACGATTACCGATATGGCCCTGATCAAGCGC
rJMSF017H18+          ATCGTATTGAAGCAGCTGAGGAGCTTTTCTACGATTACCGATATGGCCCTGATCAAGCGC
                      ____________________________________________________________
consensus             ATCGTATTGAAGCAGCTGAGGAGCTTTTCTACGATTACCGATATGGCCCTGATCAAGCGC
 
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JMSF017H18-           CTATATGGGCACGTAAACCTGAGGACTTGAAAAGAGATGATTCTCCAGTGCCCCAAGGTC
rJMSF052K21+          CTATATGGGCACGTAAACCTGAGGACTTGAAAAGAGATGATTCTCCAGTGCCCCAAGGTC
rJMSF017H18+          CTATATGGGCACGTAAACCTGAGGACTTGAAAAGAGATGATTCTCCAGTGCCCCAAGGTC
                      ____________________________________________________________
consensus             CTATATGGGCACGTAAACCTGAGGACTTGAAAAGAGATGATTCTCCAGTGCCCCAAGGTC
 
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JMSF017H18-           GACCAAAGAAGCATCACTCTCATTGAAACCATATATTTATTTATAGTTGCATTTAATGGG
rJMSF052K21+          GACCAAAGAAGCATCACTCTCATTGAAACCATATATTTATTTATAGTTGCATTTAATGGG
rJMSF017H18+          GACCAAAGAAGCATCACTCTCATTGAAACCATATATTTATTTATAGTTGCATTTAATGGG
                      ____________________________________________________________
consensus             GACCAAAGAAGCATCACTCTCATTGAAACCATATATTTATTTATAGTTGCATTTAATGGG
 
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JMSF017H18-           ACACTCACTACTGTATGTTGTTTTCACAAGCAAGTCCCACTTTT                
rJMSF052K21+          ACACTCACTACTGTATGTTGTTTTCACAAGCAAGTCCCACTTTTTTTTTG-TTTTTTTTA
rJMSF017H18+          ACACTCACTACTGTATGTTGTTTTCACAAGCAAGTCCCACTTTTTTTTTGTTTTTTTTTA
                      ____________________________________________________________
consensus             ACACTCACTACTGTATGTTGTTTTCACAAGCAAGTCCCACTTTTTTTTTGTTTTTTTTTA
 
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rJMSF052K21+          ATGTTANTATNTATATATTTAGATATAAGCAATAATAAAGTGTAANCAAACTACTCAAG 
rJMSF017H18+          ATGTTATTATTTATATATTTAGATATAAGCAATAATAAAGTGTAAACAAACTACTCAAGT
                      ____________________________________________________________
consensus             ATGTTATTATTTATATATTTAGATATAAGCAATAATAAAGTGTAAACAAACTACTCAAGT