Contig 005654:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016M24Sequence252008114 (3)781005654 (2)ref|XP_009798138.1|5e-123PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 [Nicotiana sylvestris]
JMSF053G17Sequence650008114 (3)ref|XP_006344353.1|5e-60PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Solanum tuberosum]934005654 (2)ref|XP_009617095.1|1e-140PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF053G17+                  AGACATCAGTAGCAGCATNTAATTCTTCCAGTGCCACTGGCACTAGTGAAGC
                      ____________________________________________________________
consensus                     AGACATCAGTAGCAGCATNTAATTCTTCCAGTGCCACTGGCACTAGTGAAGC
 
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rJMSF053G17+          ATGTAAAGATTCCGGTGTTGCCGATACCAATGAGAAACTACCTTTGCAGCTGGTTGATGA
                      ____________________________________________________________
consensus             ATGTAAAGATTCCGGTGTTGCCGATACCAATGAGAAACTACCTTTGCAGCTGGTTGATGA
 
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rJMSF053G17+          AAATAATGCATGTATAGACCTAACCATTGGAGAAGATAAGGCGGTTAAAGTGTCCTCCTC
rJMSF016M24+                                                                     C
                      ____________________________________________________________
consensus             AAATAATGCATGTATAGACCTAACCATTGGAGAAGATAAGGCGGTTAAAGTGTCCTCCTC
 
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rJMSF053G17+          ATCAAAGTCTATACTGGTATTTATCGATTGGCCACAACAGCTCTTGGAAAATTATGATAC
rJMSF016M24+          ATCAAAGTCTATACTGGTATTTATCGATGGGCCACAACAGCTCTTGGAAAATTATGATAC
                      ____________________________________________________________
consensus             ATCAAAGTCTATACTGGTATTTATCGATTGGCCACAACAGCTCTTGGAAAATTATGATAC
 
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rJMSF053G17+          TCACTACCTTGAGAACTTGCCGGAAGTAACAAAATACGGGTCAGTCACAAAGAAAGCTCG
rJMSF016M24+          TCACTACCTTGAGAACTTGCCGGAAGTAACAAAATACGGGTCAGTCACAAAGAAAGCTCG
                      ____________________________________________________________
consensus             TCACTACCTTGAGAACTTGCCGGAAGTAACAAAATACGGGTCAGTCACAAAGAAAGCTCG
 
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rJMSF053G17+          TACTGAACCTCTTTCATTATACAGTTGCTTGGAAGCTTTTCTCCGTGAAGAGCCTCTGGT
rJMSF016M24+          TACTGAACCTCTTTCATTATACAGTTGCTTGGAAGCTTTTCTCCGTGAAGAGCCTCTGGT
                      ____________________________________________________________
consensus             TACTGAACCTCTTTCATTATACAGTTGCTTGGAAGCTTTTCTCCGTGAAGAGCCTCTGGT
 
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rJMSF053G17+          GCCTGAAGATATGTGGTATTGTCCTCAGTGCAAGGAGCGACGACAAGCAAGCAAGAAGCT
rJMSF016M24+          GCCTGAAGATATGTGGTATTGTCCTCAGTGCAAGGAGCGACGACAAGCAAGCAAGAAGCT
                      ____________________________________________________________
consensus             GCCTGAAGATATGTGGTATTGTCCTCAGTGCAAGGAGCGACGACAAGCAAGCAAGAAGCT
 
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rJMSF053G17+          TGACCTTTGGAGGCTACCTGAAGTGCTCGTTATTCACCTTAAAAGGTTCTCATACAGCAG
rJMSF016M24+          TGACCTTTGGAGGCTACCTGAAGTGCTCGTTATTCACCTTAAAAGGTTCTCATACAGCAG
                      ____________________________________________________________
consensus             TGACCTTTGGAGGCTACCTGAAGTGCTCGTTATTCACCTTAAAAGGTTCTCATACAGCAG
 
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rJMSF053G17+          GTCAATGAAACATAAGCTGGAAACGTTTGTCAATTTTCCCATCCATGATTTTGACGTGAC
rJMSF016M24+          GTCAATGAAACATAAGCTGGAAACGTTTGTCAATTTTCCCATCCATGATTTTGACGTGAC
                      ____________________________________________________________
consensus             GTCAATGAAACATAAGCTGGAAACGTTTGTCAATTTTCCCATCCATGATTTTGACGTGAC
 
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rJMSF053G17+          AAAGTATGTAGCAAACAAAAACAACTCTCAACGGCAGCTTTATGAACTCTATGCCTTAAC
rJMSF016M24+          AAAGTATGTAGCAAACAAAAACAACTCTCAACGGCAGCTTTATGAACTCTATGCCTTAAC
                      ____________________________________________________________
consensus             AAAGTATGTAGCAAACAAAAACAACTCTCAACGGCAGCTTTATGAACTCTATGCCTTAAC
 
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rJMSF053G17+          AAATCATTATGGTGGCATGGGAAGTGGGCACTACACAGCACATATCAAGCTTCTGGATGA
rJMSF016M24+          AAATCATTATGGTGGCATGGGAAGTGGGCACTACACAGCACATATCAAGCTTCTGGATGA
                      ____________________________________________________________
consensus             AAATCATTATGGTGGCATGGGAAGTGGGCACTACACAGCACATATCAAGCTTCTGGATGA
 
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rJMSF053G17+          AAATAGGTGGTACAATTTTGATGACAGCCACATATCTCCAATCAATGAAGAAGACGTGAA
rJMSF016M24+          AAATAGGTGGTACAATTTTGATGACAGCCACATATCTCCAATCAATGAAGAAGACGTGAA
                      ____________________________________________________________
consensus             AAATAGGTGGTACAATTTTGATGACAGCCACATATCTCCAATCAATGAAGAAGACGTGAA
 
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rJMSF053G17+          GTCTGCTGCTGCTTACGTTTTGTTCTATCGGAGGGTAAAAACTGACGATAATTCTGCAAG
rJMSF016M24+          GTCTGCTGCTGCTTACGTTTTGTTCTATCGGAGGGTAAAAACTGACGATAATTCTGCAAG
                      ____________________________________________________________
consensus             GTCTGCTGCTGCTTACGTTTTGTTCTATCGGAGGGTAAAAACTGACGATAATTCTGCAAG
 
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rJMSF053G17+          CAATGGGATAGCGTCCTCGGGTGGTCACCACTCCATCTCTTCTCGCAAGTAGCATGCTAG
rJMSF016M24+          CAATGGGATAGCGTCCTCGGGTGGTCACCACTCCATCTCTTCTCGCAAGTAGCATGCTAG
                      ____________________________________________________________
consensus             CAATGGGATAGCGTCCTCGGGTGGTCACCACTCCATCTCTTCTCGCAAGTAGCATGCTAG
 
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rJMSF053G17+          GTTTTGTACATCCATGTAAGAACTGGAATTAGCGTATTATATTACTGTATTATTATTACG
rJMSF016M24+          GTTTTGTACATCCATGTAAGAACTGGAATTAGCGTATTATATTACTGTATTATTATTACG
                      ____________________________________________________________
consensus             GTTTTGTACATCCATGTAAGAACTGGAATTAGCGTATTATATTACTGTATTATTATTACG
 
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rJMSF053G17+          TAGAGAAATATATAGGCAGCATACAAGCAACTGGATGAAAAT                  
rJMSF016M24+          TAGAGAAATATATAGGCAGCATACAAGCAACTGGATGAAAATGATCTTAAAGATTTGCAA
                      ____________________________________________________________
consensus             TAGAGAAATATATAGGCAGCATACAAGCAACTGGATGAAAATGATCTTAAAGATTTGCAA