Contig 005652:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016G23Sequence261016746ref|XP_009608951.1|3e-42PREDICTED: HIPL1 protein-like [Nicotiana tomentosiformis]767005652 (2)emb|CDP00262.1|3e-99unnamed protein product [Coffea canephora]
JMSF037L21Sequence679018983ref|XP_009608951.1|5e-61PREDICTED: HIPL1 protein-like [Nicotiana tomentosiformis]649005652 (2)ref|XP_010320642.1|7e-65PREDICTED: HIPL2 protein-like [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF016G23+                      TCAGAAATCCTNGGCGCTGCAGCTTTGATGCAGAAAGGCCTAACTATT
                      ____________________________________________________________
consensus                         TCAGAAATCCTNGGCGCTGCAGCTTTGATGCAGAAAGGCCTAACTATT
 
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rJMSF037L21+                                                                 GGGAG
rJMSF016G23+          TCCTCTGTGGAGATGTTGGCCAGGATCAATACGAAGAAGTGGATATAATTACAAAGGGAG
                      ____________________________________________________________
consensus             TCCTCTGTGGAGATGTTGGCCAGGATCAATACGAAGAAGTGGATATAATTACAAAGGGAG
 
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rJMSF037L21+          GAAACTATGGATGGAGCAATTTTGAAGGTCCTATACCATTCAAGCCTAATGAAACTGCAG
rJMSF016G23+          GAAACTATGGATGGAGCAATTTTGAAGGTCCTATACCATTCAAGCCTAATGAAACTGCAG
                      ____________________________________________________________
consensus             GAAACTATGGATGGAGCAATTTTGAAGGTCCTATACCATTCAAGCCTAATGAAACTGCAG
 
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rJMSF037L21+          GAGAGAATACTTCCACCACTTCTTTTGATCCAATCTTNCCCAGTTCTTGGGTACAACCAT
rJMSF016G23+          GAGAGAATACTTCCACCACTTCTTTTGATCCAATCTT-CCCAGTTCTTGGGTACAACCAT
                      ____________________________________________________________
consensus             GAGAGAATACTTCCACCACTTCTTTTGATCCAATCTTNCCCAGTTCTTGGGTACAACCAT
 
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rJMSF037L21+          TCTGAAATAAATAAAGAGATAGGATCAGCAGCAATATCCGGCGGATTCTTCTACCGCTCC
rJMSF016G23+          TCTGAAATAAATAAAGAGATAGGATCAGCAGCAATATCCGGCGGATTCTTCTACCGCTCC
                      ____________________________________________________________
consensus             TCTGAAATAAATAAAGAGATAGGATCAGCAGCAATATCCGGCGGATTCTTCTACCGCTCC
 
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rJMSF037L21+          CAGACTGATCCCTGCATGTATGGAAGTTATTTGTATGGGGATTTGTATGCAAAGAACATG
rJMSF016G23+          CAGACTGATCCCTGCATGTATGGAAGTTATTTGTATGGGGATTTGTATGCAAAGAACATG
                      ____________________________________________________________
consensus             CAGACTGATCCCTGCATGTATGGAAGTTATTTGTATGGGGATTTGTATGCAAAGAACATG
 
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rJMSF037L21+          TGGGCAGGTGTAGAAACCCCCAAAGACAGTGGCAACTTCACAAAAACAGACATGGCTTTT
rJMSF016G23+          TGGGCAGGTGTAGAAACCCCCAAAGACAGTGGCAACTTCACAAAAACAGACATGGCTTTT
                      ____________________________________________________________
consensus             TGGGCAGGTGTAGAAACCCCCAAAGACAGTGGCAACTTCACAAAAACAGACATGGCTTTT
 
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rJMSF037L21+          GGGTGTGCCCATGATTCACCACTCAACTGCACCACTGTCCCCAACACCCACACCCCTCTG
rJMSF016G23+          GGGTGTGCCCATGATTCACCACTCAACTGCACCACTGTCCCCAACACCCACACCCCTCTG
                      ____________________________________________________________
consensus             GGGTGTGCCCATGATTCACCACTCAACTGCACCACTGTCCCCAACACCCACACCCCTCTG
 
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rJMSF037L21+          CCTGCTTTAGGCTACATTTTCTCATTTGCTCAGGACAACAGAAAAGATGTTTTCATCTTA
rJMSF016G23+          CCTGCTTTAGGCTACATTTTCTCATTTGCTCAGGACAACAGAAAAGATGTTTTCATCTTA
                      ____________________________________________________________
consensus             CCTGCTTTAGGCTACATTTTCTCATTTGCTCAGGACAACAGAAAAGATGTTTTCATCTTA
 
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rJMSF037L21+          ACCAGCACCGGCGTTTACAGAGTTGTCAGACCAAGCCGCTGCGGTTACACCTGCCCTAAA
rJMSF016G23+          ACCAGCACCGGCGTTTACAGAGTTGTCAGACCAAGCCGCTGCGGTTACACCTGCCCTAAA
                      ____________________________________________________________
consensus             ACCAGCACCGGCGTTTACAGAGTTGTCAGACCAAGCCGCTGCGGTTACACCTGCCCTAAA
 
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rJMSF037L21+          GAGAAGGTGGCGGTTGATAGTCGTCGGCCTCCTTCTCCGGCTCCGGCTCCGGACACCGCC
rJMSF016G23+          GAGAAGGTGGCGGTTGATAGTCGTCGGCCTCCTTCTCCGGCTCCGGCTCCGGACACCGCC
                      ____________________________________________________________
consensus             GAGAAGGTGGCGGTTGATAGTCGTCGGCCTCCTTCTCCGGCTCCGGCTCCGGACACCGCC
 
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rJMSF037L21+          CACCGGGCTTATTCAATGGAGCTCATTCTGTCATCTTTGCTGCTTTTGCTTGGCTACTTA
rJMSF016G23+          CACCGGGCTTATTCAATGGAGCTCATTCTGTCATCTTTGCTGCTTTTGCTTGGCTACTTA
                      ____________________________________________________________
consensus             CACCGGGCTTATTCAATGGAGCTCATTCTGTCATCTTTGCTGCTTTTGCTTGGCTACTTA
 
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rJMSF037L21+          ATAATATTGTTGTAGTGCTTTTGGTTTTGTTTACC                         
rJMSF016G23+          ATAATATTGTTGTAGTGCTTTTGGTTTTGTTTACCCTTGTATAATTAACCAATGGTGATG
                      ____________________________________________________________
consensus             ATAATATTGTTGTAGTGCTTTTGGTTTTGTTTACCCTTGTATAATTAACCAATGGTGATG