Contig 005649:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015J09Sequence586002169 (3)774005649 (2)ref|XP_009797500.1|4e-28PREDICTED: WPP domain-interacting protein 2 [Nicotiana sylvestris] ref|XP_009797
JMSF045O15Sequence729002169 (3)ref|XP_009776682.1|2e-34PREDICTED: WPP domain-interacting protein 1 [Nicotiana sylvestris]627005649 (2)ref|XP_009797500.1|2e-14PREDICTED: WPP domain-interacting protein 2 [Nicotiana sylvestris] ref|XP_009797

Alignment

This contig is upended


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rJMSF015J09+                TAGCTTGAAACAGATTGTGAAACTTTCTGAAAGCAAGCTTGTAGAGGCAAGAAC
                      ____________________________________________________________
consensus                   TAGCTTGAAACAGATTGTGAAACTTTCTGAAAGCAAGCTTGTAGAGGCAAGAAC
 
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rJMSF015J09+          CATGCTTAAGTTGAAAGAAGCTAAAATCTCTGAGCTCGAAGCCATTATAAGCAACAATAG
                      ____________________________________________________________
consensus             CATGCTTAAGTTGAAAGAAGCTAAAATCTCTGAGCTCGAAGCCATTATAAGCAACAATAG
 
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rJMSF045O15+                       GGGACGGGGATAAAATTTCAGAGCACTGGAGACATAGAAACTGAGGN
rJMSF015J09+          CTCAAGGAATGAGGGGACGGGGATAAAATTTCAGAGCACTGGAGACATAGAAACTGAGGT
                      ____________________________________________________________
consensus             CTCAAGGAATGAGGGGACGGGGATAAAATTTCAGAGCACTGGAGACATAGAAACTGAGGT
 
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rJMSF045O15+          TGAGAGCC-TTTTAAGCAGAAACTTGAAGCTGACGTTGAGTTGTTGGTAATATCAAAGGC
rJMSF015J09+          TGAGAGCCTTTTTAAGCAGAAACTTGAAGCTGACGTTGAGTTGTTGGTAATATCAAAGGC
                      ____________________________________________________________
consensus             TGAGAGCCTTTTTAAGCAGAAACTTGAAGCTGACGTTGAGTTGTTGGTAATATCAAAGGC
 
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rJMSF045O15+          AGTCAGAGATCAAAAAACTGCTGCACAAATTAGCCTATTAGAAGAACAGAAGGCTCTAGC
rJMSF015J09+          AGTCAGAAATCAAAAAACTGCTGCACAAATTAGCCTATTAGAAGAACAGAAGGCTCTAGC
                      ____________________________________________________________
consensus             AGTCAGAGATCAAAAAACTGCTGCACAAATTAGCCTATTAGAAGAACAGAAGGCTCTAGC
 
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rJMSF045O15+          TAAAACCCAAGCAGAAATGGCAAACAAAAATGGATGTGCTCCAAAAAAGGCCGCTCTGCC
rJMSF015J09+          TAAAACCCAAGCAGAAATGGCAAACAAAAATGGATGTGCTCCAAAAAAGGCCGCTCTGCC
                      ____________________________________________________________
consensus             TAAAACCCAAGCAGAAATGGCAAACAAAAATGGATGTGCTCCAAAAAAGGCCGCTCTGCC
 
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rJMSF045O15+          CAACTGTGAAGACGAGAGGTCGCAGAATTACAGTGAAAATATCGTCGTCACAGCCGATGA
rJMSF015J09+          CAACTGTGAAGACGAGAGGTCGCAGAATTACAGTGAAAATATCGTCGTCACAGCCGATGA
                      ____________________________________________________________
consensus             CAACTGTGAAGACGAGAGGTCGCAGAATTACAGTGAAAATATCGTCGTCACAGCCGATGA
 
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rJMSF045O15+          AACTGTAAAGATACGGAAGGAGGTTTTTAAGTACACACGGTGTTTCTTTTTGCAGCTGGT
rJMSF015J09+          AACTGTAAAGATACGGAAGGAGGTTTTTAAGTACACACGGTGTTTCTTTTTGCAGCTGGT
                      ____________________________________________________________
consensus             AACTGTAAAGATACGGAAGGAGGTTTTTAAGTACACACGGTGTTTCTTTTTGCAGCTGGT
 
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rJMSF045O15+          ATTACTGGTTCTTGTTGTTGGACTGTTTGTGTTGCAGCTATCTCCTCATCAAGCTGAGGT
rJMSF015J09+          ATTACTGGTTCTTGTTGTTGGACTGTTTGTGTTGCAGCTATCTCCTCATCAAGCTGAGGT
                      ____________________________________________________________
consensus             ATTACTGGTTCTTGTTGTTGGACTGTTTGTGTTGCAGCTATCTCCTCATCAAGCTGAGGT
 
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rJMSF045O15+          CATACCCACATAGTTATTTGCAGCATTAAAGCCTCGGTTCGGTAATTCTTCCCTACCTTC
rJMSF015J09+          CATACCCACATAGTTATTTGCAGCATTAAAGCCTCGGTTCGGTAATTCTTCCCTACCTTC
                      ____________________________________________________________
consensus             CATACCCACATAGTTATTTGCAGCATTAAAGCCTCGGTTCGGTAATTCTTCCCTACCTTC
 
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rJMSF045O15+          TGTACACTGTTCATCTCAGCATTAAGCAATCTTGAACATCAGTTTCTTTGAGATGTTTAT
rJMSF015J09+          TGTACACTGTTCATCTCAGCATTAAGCAATCTTGAACATCAGTTTCTTTGAGATGTTTAT
                      ____________________________________________________________
consensus             TGTACACTGTTCATCTCAGCATTAAGCAATCTTGAACATCAGTTTCTTTGAGATGTTTAT
 
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rJMSF045O15+          AGACGACAATAGATAGATCGATAGAGCGATCAACCATATTTTGTGTCTTCTCATTTTGAT
rJMSF015J09+          AGACGACAATAGATAGATCGATAGAGCGATCAACCATATTTTGTGTCTTCTCATTTTGAT
                      ____________________________________________________________
consensus             AGACGACAATAGATAGATCGATAGAGCGATCAACCATATTTTGTGTCTTCTCATTTTGAT
 
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rJMSF045O15+          ATTATTATCTCATCCTGTATTTGTATAATATAC                           
rJMSF015J09+          ATTATTATCTCATCCTGTATTTGTATAATATACAATACTACTGTTCACTTTCTTCATTGT
                      ____________________________________________________________
consensus             ATTATTATCTCATCCTGTATTTGTATAATATACAATACTACTGTTCACTTTCTTCATTGT