Contig 005647:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN030C20Sequence621005647 (4)ref|XP_009778974.1|1e-39PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X2 [Nicotiana
JMSF014H03Sequence247006513 (5)788005647 (4)ref|XP_009778974.1|3e-47PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X2 [Nicotiana
JMSF022J22Sequence655006513 (5)ref|XP_009778973.1|5e-91PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X1 [Nicotiana 798005647 (4)ref|XP_009778974.1|2e-50PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X2 [Nicotiana
JMSF051N15Sequence671006513 (5)ref|XP_009778973.1|1e-96PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X1 [Nicotiana 768005647 (4)ref|XP_009778974.1|7e-41PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X2 [Nicotiana

Alignment

This contig is upended


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rJMSF022J22+                                              ACAAAGNTGCAGGTAGTTCGACAT
rJMSF014H03+                                                              TTCGACAT
                      ____________________________________________________________
consensus                                                 ACAAAGNTGCAGGTAGTTCGACAT
 
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rJMSF022J22+          TTTTGGGAACGGAATGACATTAAGGGTGCTATCAATGCCTTGAAAAAGTTGCCTGATCAT
rJMSF051N15+                     GAATGACATTAAGGGTGCTATCAATGCCNTGAAAAAGTTGCCTGATCAT
JMFN030C20-                                  GGGTGCTATCAATGCCTTGAAAAAGTTGCCTGATCAT
rJMSF014H03+          TTTTGGGAACGGAATGACATTAAGGGTGCTATCAATGCCTTGAAAAAGTTGCCTGATCAT
                      ____________________________________________________________
consensus             TTTTGGGAACGGAATGACATTAAGGGTGCTATCAATGCCTTGAAAAAGTTGCCTGATCAT
 
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rJMSF022J22+          TCTGTACAAGCAGATGTAGTCAGTGTTCTGATTGAAAGAATGGAGGTTATTACCTTAGAG
rJMSF051N15+          TCTGTACAAGCAGATGTAGTCAGTGTTCTGATTGAAAGAATGGAGGTTATTACCTTAGAG
JMFN030C20-           TCTGTACAAGCAGATGTAGTCAGTGTTCTGATTGAAAGAATGGAGGTTATTACCTTAGAG
rJMSF014H03+          TCTGTACAAGCAGATGTAGTCAGTGTTCTGATTGAAAGAATGGAGGTTATTACCTTAGAG
                      ____________________________________________________________
consensus             TCTGTACAAGCAGATGTAGTCAGTGTTCTGATTGAAAGAATGGAGGTTATTACCTTAGAG
 
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rJMSF022J22+          TTGTTTTCTTCTTTACTTCCTGTGCTATTGGCCTTACTAGACAGCAAGATTGAAAGACAT
rJMSF051N15+          TTGTTTTCTTCTTTACTTCCTGTGCTATTGGCCTTACTAGACAGCAAGATTGAAAGACAT
JMFN030C20-           TTGTTTTCTTCTTTACTTCCTGTGCTATTGGCCTTACTAGACAGCAAGATTGAAAGACAT
rJMSF014H03+          TTGTTTTCTTCTTTACTTCCTGTGCTATTGGCCTTACTAGACAGCAAGATTGAAAGACAT
                      ____________________________________________________________
consensus             TTGTTTTCTTCTTTACTTCCTGTGCTATTGGCCTTACTAGACAGCAAGATTGAAAGACAT
 
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rJMSF022J22+          GCAAATGTTTCTCTAGAGATGCTGTTGAAGCTCGTGGCAATCTTTGGTCCAGTGGTCCGA
rJMSF051N15+          GCAAATGTTTCTCTAGAGATGCTGTTGAAGCTCGTGGCAATCTTTGGTCCAGTGGTCCGA
JMFN030C20-           GCAAATGTTTCTCTAGAGATGCTGTTGAAGCTCGTGGCAATCTTTGGTCCAGTGGTCCGA
rJMSF014H03+          GCAAATGTTTCTCTAGAGATGCTGTTGAAGCTCGTGGCAATCTTTGGTCCAGTGGTCCGA
                      ____________________________________________________________
consensus             GCAAATGTTTCTCTAGAGATGCTGTTGAAGCTCGTGGCAATCTTTGGTCCAGTGGTCCGA
 
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rJMSF022J22+          TCAGCTGCTTCTGCACGTCCATCTGTAGGTGTTGATCTTCATGCCGAGCAGAGAATTGAG
rJMSF051N15+          TCAGCTGCTTCTGCACGTCCATCTGTAGGTGTTGATCTTCATGCCGAGCAGAGAATTGAG
JMFN030C20-           TCAGCTGCTTCTGCACGTCCATCTGTAGGTGTTGATCTTCATGCCGAGCAGAGAATTGAG
rJMSF014H03+          TCAGCTGCTTCTGCACGTCCATCTGTAGGTGTTGATCTTCATGCCGAGCAGAGAATTGAG
                      ____________________________________________________________
consensus             TCAGCTGCTTCTGCACGTCCATCTGTAGGTGTTGATCTTCATGCCGAGCAGAGAATTGAG
 
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rJMSF022J22+          TGCTGCAGACAGTGCTTGGCGCATCTCCAAATTATCCAACAGATTATTCCGACACTCATA
rJMSF051N15+          TGCTGCAGACAGTGCTTGGCGCATCTCCAAATTATCCAACAGATTATTCCGACACTCATA
JMFN030C20-           TGCTGCAGACAGTGCTTGGCGCATCTCCAAATTATCCAACAGATTATTCCGACACTCATA
rJMSF014H03+          TGCTGCAGACAGTGCTTGGCGCATCTCCAAATTATCCAACAGATTATTCCGACACTCATA
                      ____________________________________________________________
consensus             TGCTGCAGACAGTGCTTGGCGCATCTCCAAATTATCCAACAGATTATTCCGACACTCATA
 
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rJMSF022J22+          CAGAGGGGTGGTTTGGTGGCAAAATCTGCACTTCAACTAAATCTTGTTCTTCAGCAATGA
rJMSF051N15+          CAGAGGGGTGGTTTGGTGGCAAAATCTGCACTTCAACTAAATCTTGTTCTTCAGCAATGA
JMFN030C20-           CAGAGGGGTGGTTTGGTGGCAAAATCTGCACTTCAACTAAATCTTGTTCTTCAGCAATGA
rJMSF014H03+          CAGAGGGGTGGTTTGGTGGCAAAATCTGCACTTCAACTAAATCTTGTTCTTCAGCAATGA
                      ____________________________________________________________
consensus             CAGAGGGGTGGTTTGGTGGCAAAATCTGCACTTCAACTAAATCTTGTTCTTCAGCAATGA
 
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rJMSF022J22+          TAAGATAATCTGCACATTTTCATCTTACTACTCATCAAGGGGCACTCTTGTGTACAATCT
rJMSF051N15+          TAAGATAATCTGCACATTTTCATCTTACTACTCATCAAGGGGCACTCTTGTGTACAATCT
JMFN030C20-           TAAGATAATCTGCACATTTTCATCTTACTACTCATCAAGGGGCACTCTTGTGTACAATCT
rJMSF014H03+          TAAGATAATCTGCACATTTTCATCTTACTACTCATCAAGGGGCACTCTTGTGTACAATCT
                      ____________________________________________________________
consensus             TAAGATAATCTGCACATTTTCATCTTACTACTCATCAAGGGGCACTCTTGTGTACAATCT
 
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rJMSF022J22+          GGGGATATCGCAGTTTTGTCCATATGATTTCCGTCTTTTGCTGCCAATTCTCGGCCTCCT
rJMSF051N15+          GGGGATATCGCAGTTTTGTCCATATGATTTCCGTCTTTTGCTGCCAATTCTCGGCCTCCT
JMFN030C20-           GGGGATATCGCAGTTTTGTCCATATGATTTCCGTCTTTTGCTGCCAATTCTCGGCCTCCT
rJMSF014H03+          GGGGATATCGCAGTTTTGTCCATATGATTTCCGTCTTTTGCTGCCAATTCTCGGCCTCCT
                      ____________________________________________________________
consensus             GGGGATATCGCAGTTTTGTCCATATGATTTCCGTCTTTTGCTGCCAATTCTCGGCCTCCT
 
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rJMSF022J22+          TTCGGGTAGCCATTAAGCCGAGGCCCGAGGGGAGCATGCATGAGCGTGACCATATCCGTA
rJMSF051N15+          TTCGGGTAGCCATTAAGCCGAGGCCCGAGGGGAGCATGCATGAGCGTGACCATATCCGTA
JMFN030C20-           TTCGGGTAGCCATTAAGCCGAGGCCCGAGGGGAGCATGCATGAGCGTGACCATATCCGTA
rJMSF014H03+          TTCGGGTAGCCATTAAGCCGAGGCCCGAGGGGAGCATGCATGAGCGTGACCATATCCGTA
                      ____________________________________________________________
consensus             TTCGGGTAGCCATTAAGCCGAGGCCCGAGGGGAGCATGCATGAGCGTGACCATATCCGTA
 
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rJMSF022J22+          TATCACCCCAGCTTGGGGTTCGAGAAAATCCTATGTTCTTGGCTTCAGGCGTTTTTGTAG
rJMSF051N15+          TATCACCCCAGCTTGGGGTTCGAGAAAATCCTATGTTCTTGGCTTCAGGCGTTTTTGTAG
JMFN030C20-           TATCACCCCAGCTTGGGGTTCGAGAAAATCCTATGTTCTTGGCT                
rJMSF014H03+          TATCACCCCAGCTTGGGGTTCGAGAAAATCCTATGTTCTTGGCTTCAGGCGTTTTTGTAG
                      ____________________________________________________________
consensus             TATCACCCCAGCTTGGGGTTCGAGAAAATCCTATGTTCTTGGCTTCAGGCGTTTTTGTAG
 
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rJMSF022J22+          TACCCAACAACTGATAATATGCCTTTGCAGATATTGTAGCAAGAATTTGTGCTCCAATAG
rJMSF051N15+          TACCCAACAACTGATAATATGCCTTTGCAGATATTGTAGCAAGAATTTGTGCTCCAATAG
rJMSF014H03+          TACCCAACAACTGATAATATGCCTTTGCAGATATTGTAGCAAGAATTTGTGCTCCAATAG
                      ____________________________________________________________
consensus             TACCCAACAACTGATAATATGCCTTTGCAGATATTGTAGCAAGAATTTGTGCTCCAATAG
 
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rJMSF022J22+          TTCAATTTGTATGTAATAGCTCAAATTCAATGGGATGTATACATACACT           
rJMSF051N15+          TTCAATTTGTATGTAATAGCTCAAATTCAATGGGATGTATACATACACT           
rJMSF014H03+          TTCAATTTGTATGTAATAGCTCAAATTCAATGGGATGTATACATACACTTCAATCCTTAA
                      ____________________________________________________________
consensus             TTCAATTTGTATGTAATAGCTCAAATTCAATGGGATGTATACATACACTTCAATCCTTAA