Contig 005646:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF014D18+                                       TTCAAAGAATCCATTTCCATTATTCTNGGAG
                      ____________________________________________________________
consensus                                          TTCAAAGAATCCATTTCCATTATTCTNGGAG
 
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rJMSF014D18+          GCGAAAGGTTATTCTCAAAAAAGCCTTCTGCAAGAACCTAAAGCTGGTGTAAGTTATCAT
                      ____________________________________________________________
consensus             GCGAAAGGTTATTCTCAAAAAAGCCTTCTGCAAGAACCTAAAGCTGGTGTAAGTTATCAT
 
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rJMSF014D18+          TTAAATGCTTTTTGTTTTGTGTTTATCAATGAATAATTCTTTGTAGGTTTCTGCTTTAAT
                      ____________________________________________________________
consensus             TTAAATGCTTTTTGTTTTGTGTTTATCAATGAATAATTCTTTGTAGGTTTCTGCTTTAAT
 
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rJMSF014D18+          GTTTGTAGCTAATCAATTAAGGGTATAGGTCTGAGGTGAAAATGTATCTACCCATCACTG
                      ____________________________________________________________
consensus             GTTTGTAGCTAATCAATTAAGGGTATAGGTCTGAGGTGAAAATGTATCTACCCATCACTG
 
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rJMSF014D18+          GAATGTTTTAACAGAGTGTAGAGCTAATATATGATGCTGATATGTATGAAACATTCTTTT
                      ____________________________________________________________
consensus             GAATGTTTTAACAGAGTGTAGAGCTAATATATGATGCTGATATGTATGAAACATTCTTTT
 
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rJMSF014D18+          ACTTGCCTTTAAAGATTGTTCAATCAAAAAAGGTTGTCATGCAAGGCCTTCCGATATAAT
                      ____________________________________________________________
consensus             ACTTGCCTTTAAAGATTGTTCAATCAAAAAAGGTTGTCATGCAAGGCCTTCCGATATAAT
 
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rJMSF014D18+          GGCTCCATGCAACTAAATGTTTCATTCTTGTCTGTGCCCTGCCAGAAGATGAATGGTTTG
                      ____________________________________________________________
consensus             GGCTCCATGCAACTAAATGTTTCATTCTTGTCTGTGCCCTGCCAGAAGATGAATGGTTTG
 
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rJMSF014D18+          TGGAAACTGCAAAGAGAGCAATAAACAAGCTTCTGTAGTTCTGTTGGGTGGGTCTGGATC
                      ____________________________________________________________
consensus             TGGAAACTGCAAAGAGAGCAATAAACAAGCTTCTGTAGTTCTGTTGGGTGGGTCTGGATC
 
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rJMSF014D18+          AGATACGTCAGAGATTTACGATTTACGACGAAGAACATATAATTCACGACGAGTTTATCT
                      ____________________________________________________________
consensus             AGATACGTCAGAGATTTACGATTTACGACGAAGAACATATAATTCACGACGAGTTTATCT
 
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rJMSF030I02+                                GCTCTNGTCTNTGGAAAATTCCGAGTCTTTTNNTTCAG
rJMSF014D18+          TGGATTCCGGCTCACCTTCTTTGCTCTCGTCTCTGGAAAGTTCCGAGTCTTTTGCTTCAG
                      ____________________________________________________________
consensus             TGGATTCCGGCTCACCTTCTTTGCTCTCGTCTCTGGAAAGTTCCGAGTCTTTTGCTTCAG
 
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rJMSF030I02+          CGCATTCGGGCGATNTTNGTAGCCCAAGTTNCNCCGATTNTGNGANCTNAGTCTTGATTG
rJMSF014D18+          CGCATTCGGGCGATTTTGGTAGCCCAAGTTTCACTGATTCTGAGAACTGAGTCTTGATTG
                      ____________________________________________________________
consensus             CGCATTCGGGCGATTTTGGTAGCCCAAGTTTCACTGATTCTGAGAACTGAGTCTTGATTG
 
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rJMSF030I02+          NTGGTAGNGTAAGGTACCTTTGNANCGCANAGATAAGATGNTGTAATGTTAAAAATGAGG
rJMSF014D18+          TTGGTAG-GTAAGGTACCTTTGAATGGCATAGATATGATGTTGTAATGTTAGAAATGAGG
                      ____________________________________________________________
consensus             TTGGTAGNGTAAGGTACCTTTGAATGGCATAGATATGATGTTGTAATGTTAGAAATGAGG
 
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rJMSF030I02+          GTAGGGCAAANGNGGTAGGGNGATTGTTT                               
rJMSF014D18+          GTAGGGCAAATGAGGTAGAGAGATTGTTTGTTGTGCAACTATGTAATTCAACCAGTAACA
                      ____________________________________________________________
consensus             GTAGGGCAAATGAGGTAGGGAGATTGTTTGTTGTGCAACTATGTAATTCAACCAGTAACA