| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012A12 | Sequence | 496 | 016262 | ref|XP_004983205.1| | 87.4 | PREDICTED: chlorophyllase-2, chloroplastic-like [Setaria italica] | 585 | 005642 (3) | ref|XP_010034594.1| | 152 | PREDICTED: chlorophyllase-2, chloroplastic-like [Eucalyptus grandis] |
| JMSF013G11 | Sequence | 440 | 007551 (32) | ref|XP_009789240.1| | 1e-32 | PREDICTED: probable calcium-binding protein CML36 [Nicotiana sylvestris] | 739 | 005642 (3) | ref|XP_007222997.1| | 1e-64 | hypothetical protein PRUPE_ppa010004mg [Prunus persica] gb|EMJ24196.1| hypotheti |
| JMSF022N02 | Sequence | 712 | 005642 (3) | ref|XP_007222997.1| | 7e-66 | hypothetical protein PRUPE_ppa010004mg [Prunus persica] gb|EMJ24196.1| hypotheti | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF022N02+ ACTAGCGTTATCCGGACACAGCCGGG
rJMSF013G11+ TTATCCGGACACAGCCGGG
____________________________________________________________
consensus ACTAGCGTTATCCGGACACAGCCGGG
. : . : . : . : . : . :
rJMSF022N02+ GAGGGAAAGTAGCATTCGCGCTAGCTCTGGGCAAGACGGCGACGGCTGATCTGAAATTCT
rJMSF013G11+ GAGGGAAAGTAGCATTCGCGCTAGCTCTGGGCAAGACGGCGACGGCTGATCTGAAATTCT
____________________________________________________________
consensus GAGGGAAAGTAGCATTCGCGCTAGCTCTGGGCAAGACGGCGACGGCTGATCTGAAATTCT
. : . : . : . : . : . :
rJMSF022N02+ CAGCCATAATCGGCGTGGACCCCGTCGGCGGAACATGCCCTGATGTCCTCAACTCCACTC
rJMSF013G11+ CAGCCATAATCGGCGTGGACCCCGTCGGCGGAACATGCCCTGATGTCCTCAACTCCACTC
____________________________________________________________
consensus CAGCCATAATCGGCGTGGACCCCGTCGGCGGAACATGCCCTGATGTCCTCAACTCCACTC
. : . : . : . : . : . :
rJMSF022N02+ CTGATTACTTCGACCTTAACATGCCAGCAATGGTGATCGGGTCGGGCTTGGGAGATGTCA
rJMFF012A12+ TTAACATGCCAGCAATGGTGATCGGGTCGGGCTTGGGAGATGTCA
rJMSF013G11+ CTGATTACTTCGACCTTAACATGCCAGCAATGGTGATCGGGTCGGGCTTGGGAGATGTCA
____________________________________________________________
consensus CTGATTACTTCGACCTTAACATGCCAGCAATGGTGATCGGGTCGGGCTTGGGAGATGTCA
. : . : . : . : . : . :
rJMSF022N02+ AGAAGAATCTTTTGAGCTGCCCTTGCGCGCCCAAGGGGTCGAACTATGCCGCTTTCTACA
rJMFF012A12+ AGAAGAATCTTTTGAGCTGCCCTTGCGCGCCCAAGGGGTCGAACTATGCCGCTTTNTACA
rJMSF013G11+ AGAAGAATCTTTTGAGCTGCCCTTGCGCGCCCAAGGGGTCGAACTATGCCGCTTTCTACA
____________________________________________________________
consensus AGAAGAATCTTTTGAGCTGCCCTTGCGCGCCCAAGGGGTCGAACTATGCCGCTTTCTACA
. : . : . : . : . : . :
rJMSF022N02+ GCAAGTGTCGCGCGCCGGCTTGTTGCTTGGTGGCTAAAGACTACGGACACACTGACATGC
rJMFF012A12+ GCAAGTGTCGCGCGCCGGCTTGTTGCTTGGTGGCTAAAGANTACGGACACACTGACATGC
rJMSF013G11+ GCAAGTGTCGCGCGCCGGCTTGTTGCTTGGTGGCTAAAGACTACGGACACACTGACATGC
____________________________________________________________
consensus GCAAGTGTCGCGCGCCGGCTTGTTGCTTGGTGGCTAAAGACTACGGACACACTGACATGC
. : . : . : . : . : . :
rJMSF022N02+ TGGACGATGATACGAGAGGGAGTTTGCGTGGGATGCTGACTTATTGTATGTGCAAGAACG
rJMFF012A12+ TGGACGATGATACGAGAGGGAGTTTGCGTGGGATGCTGACTTATTGTATGTGCAAGAACG
rJMSF013G11+ TGGACGATGATACGAGAGGGAGTTTGCGTGGGATGCTGACTTATTGTATGTGCAAGAACG
____________________________________________________________
consensus TGGACGATGATACGAGAGGGAGTTTGCGTGGGATGCTGACTTATTGTATGTGCAAGAACG
. : . : . : . : . : . :
rJMSF022N02+ GGCCGGCTAGGGCGCCGATGCGGGCGTTTGTGGGCGGCGCTGTGGTGGCGTTCTTGAGAG
rJMFF012A12+ GGCCGGCTAGGGCGCCGATGCGGGCGTTTGTGGGCGGCGCTGTGGTGGCGTTCTTGAGAG
rJMSF013G11+ GGCCGGCTAGGGCGCCGATGCGGGCGTTTGTGGGCGGCGCTGTGGTGGCGTTCTTGAGAG
____________________________________________________________
consensus GGCCGGCTAGGGCGCCGATGCGGGCGTTTGTGGGCGGCGCTGTGGTGGCGTTCTTGAGAG
. : . : . : . : . : . :
rJMSF022N02+ GGTTTTTGGAGAGTGACATGAATCCTTTGATGGGTATTATAGACCAGACTGAAACTGCAC
rJMFF012A12+ GGTTTTTGGAGAGTGACATGAATCCTTTGATGGGTATTATAGACCAGACTGAAACTGCAC
rJMSF013G11+ GGTTTTTGGAGAGTGACATGAATCCTTTGATGGGTATTATAGACCAGACTGAAACTGCAC
____________________________________________________________
consensus GGTTTTTGGAGAGTGACATGAATCCTTTGATGGGTATTATAGACCAGACTGAAACTGCAC
. : . : . : . : . : . :
rJMSF022N02+ CTGTTGAGCTTCAACCAGTGGATTCCAAAGATTTGGTGAGGGCCTAAGTTGCATGTTATT
rJMFF012A12+ CTGTTGAGCTTCAACCAGTGGATTCCAAAGATTTGGTGAGGGCCTAAGTTGCATGTTATT
rJMSF013G11+ CTGTTGAGCTTCAACCAGTGGATTCCAAAGATTTGGTGAGGGCCTAAGTTGCATGTTATT
____________________________________________________________
consensus CTGTTGAGCTTCAACCAGTGGATTCCAAAGATTTGGTGAGGGCCTAAGTTGCATGTTATT
. : . : . : . : . : . :
rJMSF022N02+ GCAAATGAATGGAATTGAAGGTTGTGTGTCAACTGTCAAGAAAGTATGGTAGGTACTAGG
rJMFF012A12+ GCAAATGAATGGAATTGAAGGTTGTGTGTCAACTGTCAAGAAAGTATGGTAGGTANTAGG
rJMSF013G11+ GCAAATGAATGGAATTGAAGGTTGTGTGTCAACTGTCAAGAAAGTATGGTAGGTACTAGG
____________________________________________________________
consensus GCAAATGAATGGAATTGAAGGTTGTGTGTCAACTGTCAAGAAAGTATGGTAGGTACTAGG
. : . : . : . : . : . :
rJMSF022N02+ TAGTAGTAAATGTAGTCAGTATTTGGGAGAAGGGAGTCGAAATGGGATCGTTATATCGTG
rJMFF012A12+ TAGTAGTAAATGTAGTCAGTATTTGGGAGAAGGGAGTCGAAATGGGATCGTTATATCGTG
rJMSF013G11+ TAGTAGTAAATGTAGTCAGTATTTGGGAGAAGGGAGTCGAAATGGGATCGTTATATCGTG
____________________________________________________________
consensus TAGTAGTAAATGTAGTCAGTATTTGGGAGAAGGGAGTCGAAATGGGATCGTTATATCGTG
. : . : . : . : . : . :
rJMSF022N02+ TNCCCTGTCCAAAACGATGTCATTTT
rJMFF012A12+ TGCCCTGTCCAAAACGATGTCATTTTTANGTTGA-GTTTAGATGTATTATGTTAAGAGT
rJMSF013G11+ TGCCCTGTCCAAAACGATGTCATTTTTAGGTTGACGTTTAGATGTATTATGTTAAGAGTT
____________________________________________________________
consensus TGCCCTGTCCAAAACGATGTCATTTTTAGGTTGACGTTTAGATGTATTATGTTAAGAGTT