Contig 005640:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006L07Sequence768005640 (4)ref|XP_011088969.1|2e-92PREDICTED: transcription factor LHW [Sesamum indicum]
JMFN039O01Sequence553005640 (4)ref|XP_011088969.1|4e-42PREDICTED: transcription factor LHW [Sesamum indicum]
JMSF003A06Sequence244000476 (3)760005640 (4)ref|XP_011088969.1|1e-92PREDICTED: transcription factor LHW [Sesamum indicum]
JMSF012M17Sequence445018864ref|XP_009625580.1|7e-50PREDICTED: transcription factor LHW isoform X2 [Nicotiana tomentosiformis]732005640 (4)ref|XP_011088969.1|8e-65PREDICTED: transcription factor LHW [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF003A06+ TGCGAGAAATTGTGCCTAATGGAGC
rJMFF006L07+ AAGGAGTTGCGAGAAATNGTGCNTAATGGAGC
                      ____________________________________________________________
consensus AAGGAGTTGCGAGAAATTGTGCCTAATGGAGC
 
. : . : . : . : . : . :
rJMSF003A06+ AAAGTGTAGCATTGATTCACTTCTGGAACGGGCTATCAAGCATATGCTTTTCTTGCAGAG
rJMFF006L07+ AAAGTGTAGCATTGATTCACTTCTGGAACGGGCTATCAAGCATATGCTTTTCTTGCAGAG
                      ____________________________________________________________
consensus AAAGTGTAGCATTGATTCACTTCTGGAACGGGCTATCAAGCATATGCTTTTCTTGCAGAG
 
. : . : . : . : . : . :
rJMSF003A06+ CATCGCGAAACACGCAGACAAACTAAAACAGATTGGAGAGTTGAAGATCATTAGTACAGA
rJMFF006L07+ CATCGCGAAACACGCAGACAAACTAAAACAGATTGGAGAGTTGAAGATCATTAGTACAGA
rJMSF012M17+ CATTAGTACAGA
                      ____________________________________________________________
consensus CATCGCGAAACACGCAGACAAACTAAAACAGATTGGAGAGTTGAAGATCATTAGTACAGA
 
. : . : . : . : . : . :
rJMSF003A06+ TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
rJMFF006L07+ TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
rJMSF012M17+ TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
                      ____________________________________________________________
consensus TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
 
. : . : . : . : . : . :
rJMSF003A06+ CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
rJMFF006L07+ CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
JMFN039O01- GGATCTGAACCAGCCTCGTCAAATGCT
rJMSF012M17+ CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
                      ____________________________________________________________
consensus CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
 
. : . : . : . : . : . :
rJMSF003A06+ CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
rJMFF006L07+ CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
JMFN039O01- CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
rJMSF012M17+ CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
                      ____________________________________________________________
consensus CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
 
. : . : . : . : . : . :
rJMSF003A06+ ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
rJMFF006L07+ ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
JMFN039O01- ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
rJMSF012M17+ ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
                      ____________________________________________________________
consensus ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
 
. : . : . : . : . : . :
rJMSF003A06+ ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
rJMFF006L07+ ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
JMFN039O01- ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
rJMSF012M17+ ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
                      ____________________________________________________________
consensus ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
 
. : . : . : . : . : . :
rJMSF003A06+ CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
rJMFF006L07+ CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
JMFN039O01- CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
rJMSF012M17+ CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
                      ____________________________________________________________
consensus CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
 
. : . : . : . : . : . :
rJMSF003A06+ ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
rJMFF006L07+ ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
JMFN039O01- ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
rJMSF012M17+ ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
                      ____________________________________________________________
consensus ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
 
. : . : . : . : . : . :
rJMSF003A06+ TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCTGCTCAAAATG
rJMFF006L07+ TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
JMFN039O01- TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
rJMSF012M17+ TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
                      ____________________________________________________________
consensus TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
 
. : . : . : . : . : . :
rJMSF003A06+ TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
rJMFF006L07+ TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
JMFN039O01- TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
rJMSF012M17+ TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
                      ____________________________________________________________
consensus TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
 
. : . : . : . : . : . :
rJMSF003A06+ GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
rJMFF006L07+ GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
JMFN039O01- GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
rJMSF012M17+ GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
                      ____________________________________________________________
consensus GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
 
. : . : . : . : . : . :
rJMSF003A06+ GGCATAGGAACATAT
rJMFF006L07+ GGCATAGGAACATAT
JMFN039O01- GGCATAGGAACATATTTGTTCATTTCAATCTAATGTTCATCAACAT
rJMSF012M17+ GGCATAGGAACATATTTGTTCATTTCAATCTAATGTTCATCAACATGCATCTCCAATGTC
                      ____________________________________________________________
consensus GGCATAGGAACATATTTGTTCATTTCAATCTAATGTTCATCAACATGCATCTCCAATGTC
 
. : . : . : . : . : . :
rJMSF012M17+ TCTTTCCTTTTCTGTCTTTTTTATTTTTAGTTTTTGTTTGTGTGATCTGTACTCGTATCT
                      ____________________________________________________________
consensus TCTTTCCTTTTCTGTCTTTTTTATTTTTAGTTTTTGTTTGTGTGATCTGTACTCGTATCT