Contig 005640:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006L07Sequence768005640 (4)ref|XP_011088969.1|2e-92PREDICTED: transcription factor LHW [Sesamum indicum]
JMFN039O01Sequence553005640 (4)ref|XP_011088969.1|4e-42PREDICTED: transcription factor LHW [Sesamum indicum]
JMSF003A06Sequence244000476 (3)760005640 (4)ref|XP_011088969.1|1e-92PREDICTED: transcription factor LHW [Sesamum indicum]
JMSF012M17Sequence445018864ref|XP_009625580.1|7e-50PREDICTED: transcription factor LHW isoform X2 [Nicotiana tomentosiformis]732005640 (4)ref|XP_011088969.1|8e-65PREDICTED: transcription factor LHW [Sesamum indicum]

Alignment

This contig is upended


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rJMSF003A06+                                             TGCGAGAAATTGTGCCTAATGGAGC
rJMFF006L07+                                      AAGGAGTTGCGAGAAATNGTGCNTAATGGAGC
                      ____________________________________________________________
consensus                                         AAGGAGTTGCGAGAAATTGTGCCTAATGGAGC
 
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rJMSF003A06+          AAAGTGTAGCATTGATTCACTTCTGGAACGGGCTATCAAGCATATGCTTTTCTTGCAGAG
rJMFF006L07+          AAAGTGTAGCATTGATTCACTTCTGGAACGGGCTATCAAGCATATGCTTTTCTTGCAGAG
                      ____________________________________________________________
consensus             AAAGTGTAGCATTGATTCACTTCTGGAACGGGCTATCAAGCATATGCTTTTCTTGCAGAG
 
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rJMSF003A06+          CATCGCGAAACACGCAGACAAACTAAAACAGATTGGAGAGTTGAAGATCATTAGTACAGA
rJMFF006L07+          CATCGCGAAACACGCAGACAAACTAAAACAGATTGGAGAGTTGAAGATCATTAGTACAGA
rJMSF012M17+                                                          CATTAGTACAGA
                      ____________________________________________________________
consensus             CATCGCGAAACACGCAGACAAACTAAAACAGATTGGAGAGTTGAAGATCATTAGTACAGA
 
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rJMSF003A06+          TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
rJMFF006L07+          TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
rJMSF012M17+          TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
                      ____________________________________________________________
consensus             TGGCGGGCTATGCTTGAAAGATAATTTTGATGGAGGGGCTACATGGGCATACGAGGTTGG
 
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rJMSF003A06+          CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
rJMFF006L07+          CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
JMFN039O01-                                            GGATCTGAACCAGCCTCGTCAAATGCT
rJMSF012M17+          CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
                      ____________________________________________________________
consensus             CTCTCAGTCTATGGTCTGCCCTATCATTATCGAGGATCTGAACCAGCCTCGTCAAATGCT
 
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rJMSF003A06+          CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
rJMFF006L07+          CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
JMFN039O01-           CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
rJMSF012M17+          CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
                      ____________________________________________________________
consensus             CGTAAAGATGCTTTGTGAAGAACGAGGCTTATTCTTGGAAATCGCTGATGTTATTCGAGG
 
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rJMSF003A06+          ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
rJMFF006L07+          ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
JMFN039O01-           ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
rJMSF012M17+          ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
                      ____________________________________________________________
consensus             ATTAGGATTAACTATCTTGATAGGAGTCATTGAAACAAGGAACCAGAAGATATGGGCACG
 
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rJMSF003A06+          ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
rJMFF006L07+          ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
JMFN039O01-           ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
rJMSF012M17+          ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
                      ____________________________________________________________
consensus             ATTTGCTGTTGAGGCTAACAGAGATGTAACAAGGATGGAGATATTCGTGTCGCTTGTTCG
 
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rJMSF003A06+          CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
rJMFF006L07+          CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
JMFN039O01-           CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
rJMSF012M17+          CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
                      ____________________________________________________________
consensus             CCTCTTGGAGCAAACGACAGCAACAAACGGAGCAGAACCATCCAACGCGAACGAAATCGA
 
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rJMSF003A06+          ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
rJMFF006L07+          ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
JMFN039O01-           ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
rJMSF012M17+          ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
                      ____________________________________________________________
consensus             ACCCGTTAAGGATCATCAGTTCAACCATGGCGCGCCAATACCAACGACGACGGGTCAGGC
 
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rJMSF003A06+          TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCTGCTCAAAATG
rJMFF006L07+          TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
JMFN039O01-           TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
rJMSF012M17+          TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
                      ____________________________________________________________
consensus             TCGAATGTTGCAGTGAGCTTGTGCATGGTGTCTGGATATGTTGAGAGCCAGCTCAAAATG
 
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rJMSF003A06+          TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
rJMFF006L07+          TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
JMFN039O01-           TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
rJMSF012M17+          TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
                      ____________________________________________________________
consensus             TGTTGCTAGCTATGACTAACTTGTCCAGGCAGATACTACTGGTGATCCAATTGAGGAGAT
 
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rJMSF003A06+          GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
rJMFF006L07+          GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
JMFN039O01-           GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
rJMSF012M17+          GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
                      ____________________________________________________________
consensus             GAATGTGTGTTTTTTCCTTTCCCCTTTTACCAAGTAAATATATTATTGTAGCAATCAAAT
 
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rJMSF003A06+          GGCATAGGAACATAT                                             
rJMFF006L07+          GGCATAGGAACATAT                                             
JMFN039O01-           GGCATAGGAACATATTTGTTCATTTCAATCTAATGTTCATCAACAT              
rJMSF012M17+          GGCATAGGAACATATTTGTTCATTTCAATCTAATGTTCATCAACATGCATCTCCAATGTC
                      ____________________________________________________________
consensus             GGCATAGGAACATATTTGTTCATTTCAATCTAATGTTCATCAACATGCATCTCCAATGTC
 
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rJMSF012M17+          TCTTTCCTTTTCTGTCTTTTTTATTTTTAGTTTTTGTTTGTGTGATCTGTACTCGTATCT
                      ____________________________________________________________
consensus             TCTTTCCTTTTCTGTCTTTTTTATTTTTAGTTTTTGTTTGTGTGATCTGTACTCGTATCT