Contig 005639:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040B23+                             AGCCACAACATCATCTTTTAGTAACTAGGAGGTCAAGAGAA
                      ____________________________________________________________
consensus                                AGCCACAACATCATCTTTTAGTAACTAGGAGGTCAAGAGAA
 
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rJMSF040B23+          TGGGACTTCTTAGCATCATCCGAAAGATCAAGAAGAAAGAAAAAGAAATGCGCATTCTTA
rJMSF012L06+                                           AGAAAGAAAAAGAAATGCGCATTCTTA
                      ____________________________________________________________
consensus             TGGGACTTCTTAGCATCATCCGAAAGATCAAGAAGAAAGAAAAAGAAATGCGCATTCTTA
 
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rJMSF040B23+          TGGTGGGACTTGACAACTCAGGCAAGACAACCATAGTTTTGAAAATAAATGGTGAAGACA
rJMSF012L06+          TGGTGGGACTTGACAACTCAGGCAAGACAACCATAGTTTTGAAAATAAATGGTGAAGACA
                      ____________________________________________________________
consensus             TGGTGGGACTTGACAACTCAGGCAAGACAACCATAGTTTTGAAAATAAATGGTGAAGACA
 
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rJMSF040B23+          CCAGTGTTATCAGTCCGACACTCGGCTTCAACATCAAAACCATTGCATATCAGAAATATA
rJMSF012L06+          CCAGTGTTATCAGTCCGACACTCGGCTTCAACATCAAAACCATTGCATATCAGAAATATA
                      ____________________________________________________________
consensus             CCAGTGTTATCAGTCCGACACTCGGCTTCAACATCAAAACCATTGCATATCAGAAATATA
 
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rJMSF040B23+          CACTAAATATATGGGATGTTGGGGGCCAAAAAACCATAAGGTCCTACTGGAGGAACTACT
rJMSF012L06+          CACTAAATATATGGGATGTTGGGGGCCAAAAAACCATAAGGTCCTACTGGAGGAACTACT
                      ____________________________________________________________
consensus             CACTAAATATATGGGATGTTGGGGGCCAAAAAACCATAAGGTCCTACTGGAGGAACTACT
 
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rJMSF040B23+          TTGAACAAACTGACGGTTTGGTGTGGGTTGTGGATAGTTCTGATCTTAGAAGGCTAGATG
rJMSF012L06+          TTGAACAAACTGACGGTTTGGTGTGGGTTGTGGATAGTTCTGATCTTAGAAGGCTAGATG
                      ____________________________________________________________
consensus             TTGAACAAACTGACGGTTTGGTGTGGGTTGTGGATAGTTCTGATCTTAGAAGGCTAGATG
 
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rJMSF040B23+          ACTGCAGATATGAATTGCATAATCTTTTGAAAGAAGAGAGGCTATCTGGAGCATCATTAC
rJMSF012L06+          ACTGCAGATATGAATTGCATAATCTTTTGAAAGAAGAGAGGCTATCTGGAGCATCATTAC
                      ____________________________________________________________
consensus             ACTGCAGATATGAATTGCATAATCTTTTGAAAGAAGAGAGGCTATCTGGAGCATCATTAC
 
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rJMSF040B23+          TGATTTTTGCAAATAAGCAAGACATACAAGGTTCTCTTTGTCCCGACGAAATAGCTAAGG
rJMSF012L06+          TGATTTTTGCAAATAAGCAAGACATACAAGGTTCTCTTTGTCCCGACGAAATAGCTAAGG
                      ____________________________________________________________
consensus             TGATTTTTGCAAATAAGCAAGACATACAAGGTTCTCTTTGTCCCGACGAAATAGCTAAGG
 
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rJMSF040B23+          TGCTTAATCTGGATGCTATGGATAAAACCCGGCACTGGAAAATTGTGGGATGTAGTGCAT
rJMSF012L06+          TGCTTAATCTGGATGCTATGGATAAAACCCGGCACTGGAAAATTGTGGGATGTAGTGCAT
                      ____________________________________________________________
consensus             TGCTTAATCTGGATGCTATGGATAAAACCCGGCACTGGAAAATTGTGGGATGTAGTGCAT
 
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rJMSF040B23+          ATACCGGAGAAGGGCTCCTCGAGGGATTTGATTGGTTAGTACAGGACGTTGCCTCTCGGA
rJMSF012L06+          ATACCGGAGAAGGGCTCCTCGAGGGATTTGATTGGTTAGTACAGGACGTTGCCTCTCGGA
                      ____________________________________________________________
consensus             ATACCGGAGAAGGGCTCCTCGAGGGATTTGATTGGTTAGTACAGGACGTTGCCTCTCGGA
 
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rJMSF040B23+          TCTATATGCTTGATTAAAATGAATCTTTCATATTAGGCAATTTGTCATCATACTGTGTGA
rJMSF012L06+          TCTATATGCTTGATTAAAATGAATCTTTCATATTAGGCAATTTGTCATCATACTGTGTGA
                      ____________________________________________________________
consensus             TCTATATGCTTGATTAAAATGAATCTTTCATATTAGGCAATTTGTCATCATACTGTGTGA
 
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rJMSF040B23+          TTTTAGAGTATAGTTTTCTCACATCCAGTGGCTTGTTTGTTATAATTTGCTTAGTGCCTT
rJMSF012L06+          TTTTAGAGTATAGTTTTCTCACATCCAGTGGCTTGTTTGTTATAATTTGCTTAGTGCCTT
                      ____________________________________________________________
consensus             TTTTAGAGTATAGTTTTCTCACATCCAGTGGCTTGTTTGTTATAATTTGCTTAGTGCCTT
 
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rJMSF040B23+          TTTTCTTCTGCTCTTTAATCTTGTGTACACCATGCATAATTGAAACTGAGGCAACTGCAT
rJMSF012L06+          TTTTCTTCTGCTCTTTAATCTTGTGTACACCATGCATAATTGAAACTGAGGCAACTGCAT
                      ____________________________________________________________
consensus             TTTTCTTCTGCTCTTTAATCTTGTGTACACCATGCATAATTGAAACTGAGGCAACTGCAT
 
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rJMSF040B23+          TGCTCATTTATGAGGTTTACAGCATAGCTATGTATTTCATAGGTTTGCTCTTT       
rJMSF012L06+          TGCTCATTTATGAGGTTTACAGCATAGCTATGTATTTCATAGGTTTGCTCTTTTGTTCTT
                      ____________________________________________________________
consensus             TGCTCATTTATGAGGTTTACAGCATAGCTATGTATTTCATAGGTTTGCTCTTTTGTTCTT