Contig 005636:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012G11Sequence473005636 (4)ref|XP_009616200.1|1e-63PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Nicotiana tom706005636 (4)ref|XP_009616200.1|8e-85PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Nicotiana tom
JMSF034M06Sequence724005636 (4)ref|XP_009616200.1|2e-84PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Nicotiana tom655005636 (4)ref|XP_009616200.1|7e-85PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Nicotiana tom

Alignment

This contig is upended


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JMSF034M06+                                           GAGCCAACAGAGCATCATCTGCAAACAA
                      ____________________________________________________________
consensus                                             GAGCCAACAGAGCATCATCTGCAAACAA
 
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rJMSF034M06-                                           GTTCATGAACAAGCCCAAAGGCTCAAC
JMSF034M06+           CATAGTACTTTGTCATCTTTATCATTACATCATGTTCATGAACAAGCCCAAAGGCTCAAC
rJMSF012G11-                                           GTTCATGAACAAGCCCAAAGGCTCAAC
                      ____________________________________________________________
consensus             CATAGTACTTTGTCATCTTTATCATTACATCATGTTCATGAACAAGCCCAAAGGCTCAAC
 
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rJMSF034M06-          ATTAACACTTCAAATGTTAACGTAAACGTTAGACTGACAAATAACATCCGATAACAACAG
JMSF034M06+           ATTAACACTTCAAATGTTAACGTAAACGTTAGACTGACAAATAACATCCGATAACAACAG
rJMSF012G11-          ATTAACACTTCAAATGTTAACGTAAACGTTAGACTGACAAATAACATCCGATAACAACAG
                      ____________________________________________________________
consensus             ATTAACACTTCAAATGTTAACGTAAACGTTAGACTGACAAATAACATCCGATAACAACAG
 
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rJMSF034M06-          TATCGGATCCATCAGAAAAAAAGACTTCGGCTTCAAACTTTCCTGATGAGAATGAACAGC
JMSF034M06+           TATCGGATCCATCAGAAAAAAAGACTTCGGCTTCAAACTTTCCTGATGAGAATGAACAGC
rJMSF012G11-          TATCGGATCCATCAGAAAAAAAGACTTCGGCTTCAAACTTTCCTGATGAGAATGAACAGC
                      ____________________________________________________________
consensus             TATCGGATCCATCAGAAAAAAAGACTTCGGCTTCAAACTTTCCTGATGAGAATGAACAGC
 
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rJMSF034M06-          CTCTGGTCGAGCTCGAATTTAGCTGCTATCGATGGATCTCCCCTCAGCTGCATCAGAAGT
JMSF034M06+           CTCTGGTCGAGCTCGAATTTAGCTGCTATCGATGGATCTCCCCTCAGCTGCATCAGAAGT
rJMSF012G11-          CTCTGGTCGAGCTCGAATTTAGCTGCTATCGATGGATCTCCCCTCAGCTGCATCAGAAGT
                      ____________________________________________________________
consensus             CTCTGGTCGAGCTCGAATTTAGCTGCTATCGATGGATCTCCCCTCAGCTGCATCAGAAGT
 
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rJMSF034M06-          CCACCGAATGAAACATATAGATCCGCTTTAGCAAGCCTTCCCGAACCTTCCTCTGATATC
JMSF034M06+           CCACCGAATGAAACATATAGATCCGCTTTAGCAAGCCTTCCCGAACCTTCCTCTGATATC
JMSF012G11+                  ATGAAACATATAGATCCGCTTTAGCAAGCCTTCCCGAACCTTCCTCTGATATC
rJMSF012G11-          CCACCGAATGAAACATATAGATCCGCTTTAGCAAGCCTTCCCGAACCTTCCTCTGATATC
                      ____________________________________________________________
consensus             CCACCGAATGAAACATATAGATCCGCTTTAGCAAGCCTTCCCGAACCTTCCTCTGATATC
 
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rJMSF034M06-          CTGTACAGCTTTCCTTGCATCACGTACTCGAACTTGTCAGCAAGCGATTTCCTGTTTCCC
JMSF034M06+           CTGTACAGCTTTCCTTGCATCACGTACTCGAACTTGTCAGCAAGCGATTTCCTGTTTCCC
JMSF012G11+           CTGTACAGCTTTCCTTGCATCACGTACTCGAACTTGTCAGCAAGCGATTTCCTGTTTCCC
rJMSF012G11-          CTGTACAGCTTTCCTTGCATCACGTACTCGAACTTGTCAGCAAGCGATTTCCTGTTTCCC
                      ____________________________________________________________
consensus             CTGTACAGCTTTCCTTGCATCACGTACTCGAACTTGTCAGCAAGCGATTTCCTGTTTCCC
 
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rJMSF034M06-          TGAAGAAAGTAACCAGAATCTGGTGTCCCATCCAAGTTTAATGTGGAGGCCAGAACCATC
JMSF034M06+           TGAAGAAAGTAACCAGAATCTGGTGTCCCATCCAAGTTTAATGTGGAGGCCAGAACCATC
JMSF012G11+           TGAAGAAAGTAACCAGAATCTGGTGTCCCATCCAAGTTTAATGTGGAGGCCAGAACCATC
rJMSF012G11-          TGAAGAAAGTAACCAGAATCTGGTGTCCCATCCAAGTTTAATGTGGAGGCCAGAACCATC
                      ____________________________________________________________
consensus             TGAAGAAAGTAACCAGAATCTGGTGTCCCATCCAAGTTTAATGTGGAGGCCAGAACCATC
 
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rJMSF034M06-          ATAAACTTCTCGTCTTGGCGGATAGGATATATATCCGTGTTTATATCTAACTGCATATAC
JMSF034M06+           ATAAACTTCTCGTCTTGGCGGATAGGATATATATCCGTGTTTATATCTAACTGCATATAC
JMSF012G11+           ATAAACTTCTCGTCTTGGCGGATAGGATATATATCCGTGTTTATATCTAACTGCATATAC
rJMSF012G11-          ATAAACTTCTCGTCTTGGCGGATAGGATATATATCCGTGTTTATATCTAACTGCATATAC
                      ____________________________________________________________
consensus             ATAAACTTCTCGTCTTGGCGGATAGGATATATATCCGTGTTTATATCTAACTGCATATAC
 
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rJMSF034M06-          ATTTCAAACTGCTCGCTCCTCGCCTCAATGCGATTAACTTTATCGAACTTTTTCCCATCT
JMSF034M06+           ATTTCAAACTGCTCGCTCCTCGCCTCAATGCGATTAACTTTATCGAACTTTTTCCCATCT
JMSF012G11+           ATTTCAAACTGCTCGCTCCTCGCCTCAATGCGATTAACTTTATCGAACTTTTTCCCATCT
rJMSF012G11-          ATTTCAAACTGCTCGCTCCTCGCCTCAATGCGATTAACTTTATCGAACTTTTTCCCATCT
                      ____________________________________________________________
consensus             ATTTCAAACTGCTCGCTCCTCGCCTCAATGCGATTAACTTTATCGAACTTTTTCCCATCT
 
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rJMSF034M06-          GGGTCTATGTTAGTTACTGTAAAAATATCCTCAAACAGCGTCTCAACCATCCTGAACCAG
JMSF034M06+           GGGTCTATGTTAGTTACTGTAAAAATATCCTCAAACAGCGTCTCAACCATCCTGAACCAG
JMSF012G11+           GGGTCTATGTTAGTTACTGTAAAAATATCCTCAAACAGCGTCTCAACCATCCTGAACCAG
rJMSF012G11-          GGGTCTATGTTAGTTACTGTAAAAATATCCTCAAACAGCGTCTCAACCATCCTGAACCAG
                      ____________________________________________________________
consensus             GGGTCTATGTTAGTTACTGTAAAAATATCCTCAAACAGCGTCTCAACCATCCTGAACCAG
 
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rJMSF034M06-          GGAGCTGATCTGAAGTCTGAACTGAGAGAAGAAGCGTCGAATCAGAGAAGAAGAAATTGA
JMSF034M06+           GGAGCTGATCTGAAGTCTGAACTGAGAGAAGAAGCGTCGAATCAGAGAAGAAGAAATTGA
JMSF012G11+           GGAGCTGATCTGAAGTCTGAACTGAGAGAAGAAGCGTCGAATCAGAGAAGAAGAAATTGA
rJMSF012G11-          GGAGCTGATCTGAAGTCTGAACTGAGAGAAGAAGCGTCGAATCAGAGAAGAAGAAATTGA
                      ____________________________________________________________
consensus             GGAGCTGATCTGAAGTCTGAACTGAGAGAAGAAGCGTCGAATCAGAGAAGAAGAAATTGA
 
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rJMSF034M06-          GTAATTGAGTTCGCTGAT                                          
JMSF034M06+           GTAATTGAGTTCGCTGATCGAACAATTTTAGGGCT                         
JMSF012G11+           GTAATTGAGTTCGCTGATCGAACAATTTTAGGGCTGGGCTTCTGTTGCAGTGTGTTAGCC
rJMSF012G11-          GTAATTGAGTTCGCTGATCGAACAATTTTAGGGCTGGGCTTCTGTTGCAGTGTGTTAGCC
                      ____________________________________________________________
consensus             GTAATTGAGTTCGCTGATCGAACAATTTTAGGGCTGGGCTTCTGTTGCAGTGTGTTAGCC