Contig 005635:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012B17Sequence240005635 (6)ref|NP_001234224.1|7e-08dehydroascorbate reductase [Solanum lycopersicum] gb|AAY47049.1| dehydroascorbat729005635 (6)ref|NP_001234224.1|2e-105dehydroascorbate reductase [Solanum lycopersicum] gb|AAY47049.1| dehydroascorbat
JMSF016G16Sequence523005635 (6)ref|NP_001234224.1|1e-61dehydroascorbate reductase [Solanum lycopersicum] gb|AAY47049.1| dehydroascorbat746005635 (6)ref|NP_001234224.1|2e-116dehydroascorbate reductase [Solanum lycopersicum] gb|AAY47049.1| dehydroascorbat
JMSF021H15Sequence644005635 (6)ref|NP_001234224.1|2e-87dehydroascorbate reductase [Solanum lycopersicum] gb|AAY47049.1| dehydroascorbat732005635 (6)ref|NP_001234224.1|2e-111dehydroascorbate reductase [Solanum lycopersicum] gb|AAY47049.1| dehydroascorbat

Alignment

This contig is upended


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JMSF016G16-                              GACCGCCATTTCACAGCTTCAGAACTGAACTTTCCAGTAAT
JMSF021H15-                              GACCGCCATTTCACAGCTTCAGAACTGAACTTTCCAGTAAT
                      ____________________________________________________________
consensus                                GACCGCCATTTCACAGCTTCAGAACTGAACTTTCCAGTAAT
 
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JMSF016G16-           TCCAGGCGTTACTCCGGCAACCGCTCCGATGTCGACCGTGAAAATAACACCGTCGGCGAT
JMSF012B17-              AGGCGTTACTCCGGCAACCGCTCCGATGTCGACCGTGAAAATAACACCGTCGGCGAT
JMSF021H15-           TCCAGGCGTTACTCCGGCAACCGCTCCGATGTCGACCGTGAAAATAACACCGTCGGCGAT
                      ____________________________________________________________
consensus             TCCAGGCGTTACTCCGGCAACCGCTCCGATGTCGACCGTGAAAATAACACCGTCGGCGAT
 
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JMSF016G16-           TTCACTTCCTGTCACTATCAAACAACTCGCCTACCTTCACCGCGGACCTAGAATTCGGAC
JMSF012B17-           TTCACTTCCTGTCACTATCAAACAACTCGCCTACCTTCACCGCGGACCTAGAATTCGGAC
JMSF021H15-           TTCACTTCCTGTCACTATCAAACAACTCGCCTACCTTCACCGCGGACCTAGAATTCGGAC
                      ____________________________________________________________
consensus             TTCACTTCCTGTCACTATCAAACAACTCGCCTACCTTCACCGCGGACCTAGAATTCGGAC
 
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JMSF016G16-           TCATTTCGCCGCAAACCCGACCCGTCTCAGAGCCCATGGCCTCCGAAGAGGCATGGTCGT
JMSF012B17-           TCATTTCGCCGCAAACCCGACCCGTCTCAGAGCCCATGGCCTCCGAAGAGGCATGGTCGT
JMSF021H15-           TCATTTCGCCGCAAACCCGACCCGTCTCAGAGCCCATGGCCTCCGAAGAGGCATGGTCGT
                      ____________________________________________________________
consensus             TCATTTCGCCGCAAACCCGACCCGTCTCAGAGCCCATGGCCTCCGAAGAGGCATGGTCGT
 
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JMSF016G16-           CACTGCAATGTCTTCGGCATCGGACCCTGTCGAAGTATGCGCTAAGGCCTCCATCACTAT
JMSF012B17-           CACTGCAATGTCTTCGGCATCGGACCCTGTCGAAGTATGCGCTAAGGCCTCCATCACTAT
JMSF021H15-           CACTGCAATGTCTTCGGCATCGGACCCTGTCGAAGTATGCGCTAAGGCCTCCATCACTAT
                      ____________________________________________________________
consensus             CACTGCAATGTCTTCGGCATCGGACCCTGTCGAAGTATGCGCTAAGGCCTCCATCACTAT
 
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JMSF016G16-           TCCCGACAGGCTAGGCGACTGTCCCTTTACTCAGAGGGTTTTGTTGACTTTAGAGGAAAA
JMSF012B17-           TC                                                          
JMSF021H15-           TCCCGACAGGCTAGGCGACTGTCCCTTTACTCAGAGGGTTTTGTTGACTTTAGAGGAAAA
rJMSF016G16+                     TAGGCGACTGTCCCTTTACTCAGAGGGTTTTGTTGACTTTAGAGGAAAA
rJMSF021H15+                                     TACTCAGAGGGTTTTGTTGACTTTAGAGGAAAA
rJMSF012B17+                                                            TAGAGGAAAA
                      ____________________________________________________________
consensus             TCCCGACAGGCTAGGCGACTGTCCCTTTACTCAGAGGGTTTTGTTGACTTTAGAGGAAAA
 
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JMSF016G16-           GCATCTTCCTTATGACTTGAAGCTGGTTGACCTAAGTAACAAACCAGAGTGGCTGTTCAA
JMSF021H15-           GCATCTTCCTTATGACTTGAAGCTGGTTGACCTAAGTAACAAACCAGAGTGGCTGTTCAA
rJMSF016G16+          GCATCTTCCTTATGACTTGAAGCTGGTTGACCTAAGTAACAAACCAGAGTGGCTGTTCAA
rJMSF021H15+          GCATCTTCCTTATGACTTGAAGCTGGTTGACCTAAGTAACAAACCAGAGTGGCTGTTCAA
rJMSF012B17+          GCATCTTCCTTATGACTTGAAGCTGGTTGACCTAAGTAACAAACCAGAGTGGCTGTTCAA
                      ____________________________________________________________
consensus             GCATCTTCCTTATGACTTGAAGCTGGTTGACCTAAGTAACAAACCAGAGTGGCTGTTCAA
 
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JMSF016G16-           AATTAGCCCGGAAGGGAAGGTTCCTGTGGTGAAGATTGATGAGAAGTGGGTTCCAGATTC
JMSF021H15-           AATTAGCCCGGAAGGGAAGGTTCCTGTGGTGAAGATTGATGAGAAGTGGGTTCCAGATTC
rJMSF016G16+          AATTAGCCCGGAAGGGAAGGTTCCTGTGGTGAAGATTGATGAGAAGTGGGTTCCAGATTC
rJMSF021H15+          AATTAGCCCGGAAGGGAAGGTTCCTGTGGTGAAGATTGATGAGAAGTGGGTTCCAGATTC
rJMSF012B17+          AATTAGCCCGGAAGGGAAGGTTCCTGTGGTGAAGATTGATGAGAAGTGGGTTCCAGATTC
                      ____________________________________________________________
consensus             AATTAGCCCGGAAGGGAAGGTTCCTGTGGTGAAGATTGATGAGAAGTGGGTTCCAGATTC
 
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JMSF016G16-           AGATGTTATCACGCAGGCGCTGGAAGAGAAGTTCCCTGATCCATCGCTGAAAACGCCGCC
JMSF021H15-           AGATGTTATCACGCAGGCGCTGGAAGAGAAGTTCCCTGATCCATCGCTGAAAACGCCGCC
rJMSF016G16+          AGATGTTATCACGCAGGCGCTGGAAGAGAAGTTCCCTGATCCATCGCTGAAAACGCCGCC
rJMSF021H15+          AGATGTTATCACGCAGGCGCTGGAAGAGAAGTTCCCTGATCCATCGCTGAAAACGCCGCC
rJMSF012B17+          AGATGTTATCACGCAGGCGCTGGAAGAGAAGTTCCCTGATCCATCGCTGAAAACGCCGCC
                      ____________________________________________________________
consensus             AGATGTTATCACGCAGGCGCTGGAAGAGAAGTTCCCTGATCCATCGCTGAAAACGCCGCC
 
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JMSF021H15-           AGAGAAGGCTTCTGTTGGATCAAAGATCTTCGCCAAGTTTATTGGGTTTCTGAAAAGCAA
rJMSF016G16+          AGAGAAGGCTTCTGTTGGATCAAAGATCTTCGCCAAGTTTATTGGGTTTCTGAAAAGCAA
rJMSF021H15+          AGAGAAGGCTTCTGTTGGATCAAAGATCTTCGCCAAGTTTATTGGGTTTCTGAAAAGCAA
rJMSF012B17+          AGAGAAGGCTTCTGTTGGATCAAAGATCTTCGCCAAGTTTATTGGGTTTCTGAAAAGCAA
                      ____________________________________________________________
consensus             AGAGAAGGCTTCTGTTGGATCAAAGATCTTCGCCAAGTTTATTGGGTTTCTGAAAAGCAA
 
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JMSF021H15-           AGACCCTGCTGATGGAACGGAGCAAGCATTAGTAGAAGAGCTGACTGCTTTTAATGATTA
rJMSF016G16+          AGACCCTGCTGATGGAACGGAGCAAGCATTAGTAGAAGAGCTGACTGCTTTTAATGATTA
rJMSF021H15+          AGACCCTGCTGATGGAACGGAGCAAGCATTAGTAGAAGAGCTGACTGCTTTTAATGATTA
rJMSF012B17+          AGACCCTGCTGATGGAACGGAGCAAGCATTAGTAGAAGAGCTGACTGCTTTTAATGATTA
                      ____________________________________________________________
consensus             AGACCCTGCTGATGGAACGGAGCAAGCATTAGTAGAAGAGCTGACTGCTTTTAATGATTA
 
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JMSF021H15-           CCT                                                         
rJMSF016G16+          CCTTAAAGAAAATGGCCCATTTATCAGTGGAAATGAGGTGTCTGCTGCTGACTTGTCTCT
rJMSF021H15+          CCTTAAAGAAAATGGCCCATTTATCAGTGGAAATGAGGTGTCTGCTGCTGACTTGTCTCT
rJMSF012B17+          CCTTAAAGAAAATGGCCCATTTATCAGTGGAAATGAGGTGTCTGCTGCTGACTTGTCTCT
                      ____________________________________________________________
consensus             CCTTAAAGAAAATGGCCCATTTATCAGTGGAAATGAGGTGTCTGCTGCTGACTTGTCTCT
 
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rJMSF016G16+          AGGACCAAAGCTGTATCACATGGAGATTGCTCTGGGGCACTACAAGAAGTGGTCAGTCCC
rJMSF021H15+          AGGACCAAAGCTGTATCACATGGAGATTGCTCTGGGGCACTACAAGAAGTGGTCAGTCCC
rJMSF012B17+          AGGACCAAAGCTGTATCACATGGAGATTGCTCTGGGGCACTACAAGAAGTGGTCAGTCCC
                      ____________________________________________________________
consensus             AGGACCAAAGCTGTATCACATGGAGATTGCTCTGGGGCACTACAAGAAGTGGTCAGTCCC
 
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rJMSF016G16+          AGATTCACTTATCTATCTGAAGTCGTACATGAAGGACATATTCTCCCGGGATTCCTTTGT
rJMSF021H15+          AGATTCACTTATCTATCTGAAGTCGTACATGAAGGACATATTCTCCCGGGATTCCTTTGT
rJMSF012B17+          AGATTCACTTATCTATCTGAAGTCGTACATGAAGGACATATTCTCCCGGGATTCCTTTGT
                      ____________________________________________________________
consensus             AGATTCACTTATCTATCTGAAGTCGTACATGAAGGACATATTCTCCCGGGATTCCTTTGT
 
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rJMSF016G16+          CAAAACAAGGGCAGTGACAGAGGATGTAATTGAAGGTTGGAGACCAAAGGTCGAGGGGTA
rJMSF021H15+          CAAAACAAGGGCAGTGACAGAGGATGTAATTGAAGGTTGGAGACCAAAGGTCGAGGGGTA
rJMSF012B17+          CAAAACAAGGGCAGTGACAGAGGATGTAATTGAAGGTTGGAGACCAAAGGTCGAGGGGTA
                      ____________________________________________________________
consensus             CAAAACAAGGGCAGTGACAGAGGATGTAATTGAAGGTTGGAGACCAAAGGTCGAGGGGTA
 
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rJMSF016G16+          GACGAAGAAACATTTCAGGATTACATTACAAACCGAGGTACATGCAGATAGAAGTTAGCA
rJMSF021H15+          GACGAAGAAACATTTCAGGATTACATTACAAACCGAGGTACATGCAGATAGAAGTTAGCA
rJMSF012B17+          GACGAAGAAACATTTCAGGATTACATTACAAACCGAGGTACATGCAGATAGAAGTTAGCA
                      ____________________________________________________________
consensus             GACGAAGAAACATTTCAGGATTACATTACAAACCGAGGTACATGCAGATAGAAGTTAGCA
 
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rJMSF016G16+          ACCCCACTCTTCTCTCATTTTTCAATATGGTTTTGACAATAAGAAATATAACTTTGTATG
rJMSF021H15+          ACCCCACTCTTCTCTCATTTTTCAATATGGTTTTGACAATAAGAAATATAACTTTGTATG
rJMSF012B17+          ACCCCACTCTTCTCTCATTTTTCAATATGGTTTTGACAATAAGAAATATAACTTTGTATG
                      ____________________________________________________________
consensus             ACCCCACTCTTCTCTCATTTTTCAATATGGTTTTGACAATAAGAAATATAACTTTGTATG
 
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rJMSF016G16+          CTTCATTAA-CAGTCATATACACATTTGTGACACAAAC                      
rJMSF021H15+          CTTCATTAACCAGTCATATACACATTTGTGACACAAAC                      
rJMSF012B17+          CTTCATTAA-CAGTCATATACACATTTGTGACACAAACTCGTAAATTCTCATCAAAAGAT
                      ____________________________________________________________
consensus             CTTCATTAA-CAGTCATATACACATTTGTGACACAAACTCGTAAATTCTCATCAAAAGAT