Contig 005633:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011L19Sequence270001910 (12)gb|ACU19661.1|1e-27unknown [Glycine max]751005633 (4)ref|XP_009795130.1|3e-108PREDICTED: coatomer subunit gamma [Nicotiana sylvestris]
JMSF035M19Sequence665001910 (12)emb|CAN61312.1|2e-111hypothetical protein VITISV_013386 [Vitis vinifera]625005633 (4)ref|XP_007042213.1|1e-79Coatomer gamma-2 subunit / gamma-2 coat protein / gamma-2 COP, putative isoform
JMSF038K07Sequence636001910 (12)emb|CAN61312.1|3e-116hypothetical protein VITISV_013386 [Vitis vinifera]941005633 (4)ref|XP_009795130.1|3e-143PREDICTED: coatomer subunit gamma [Nicotiana sylvestris]
JMSF046B22Sequence748001910 (12)emb|CAN61312.1|2e-126hypothetical protein VITISV_013386 [Vitis vinifera]668005633 (4)ref|XP_007042213.1|9e-85Coatomer gamma-2 subunit / gamma-2 coat protein / gamma-2 COP, putative isoform

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+                                        GCTGAGACAGAATATGCAGTCAATGTGGTG
                      ____________________________________________________________
consensus                                           GCTGAGACAGAATATGCAGTCAATGTGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          AAACACATTTTTGATAGTCATGTTGTGTTCCAGTATAATTGCACGAACACAATTCCCGAG
                      ____________________________________________________________
consensus             AAACACATTTTTGATAGTCATGTTGTGTTCCAGTATAATTGCACGAACACAATTCCCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          CAACAGCTAGAGAATGTCACAGTTATTGTTGATGCTTCTGAAGCGGAGGAGTTTTCTGAA
                      ____________________________________________________________
consensus             CAACAGCTAGAGAATGTCACAGTTATTGTTGATGCTTCTGAAGCGGAGGAGTTTTCTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          GCAGCTTCCAAACCTCTGAAATCTCTTCCATATGATACCCCCGGGCAAACATTTGTAGCA
rJMSF011L19+                                      CATATGATACCCCCGGGCAAACATTTGTAGCA
                      ____________________________________________________________
consensus             GCAGCTTCCAAACCTCTGAAATCTCTTCCATATGATACCCCCGGGCAAACATTTGTAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          TTTGAGAAACCAGAAGGAGTCCCTGCAATTGGGAAATTCTCTAACACACTGAGGTTCATT
rJMSF046B22+                                                            GAGGTTCATT
rJMSF011L19+          TTTGAGAANCCAGAAGGAGTCCCTGCAATTGGGAAATTCTCTAACACACTGAGGTTCATT
                      ____________________________________________________________
consensus             TTTGAGAAACCAGAAGGAGTCCCTGCAATTGGGAAATTCTCTAACACACTGAGGTTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          GTCAAAGAGGTTGATCCATCTACTGGTGAAGCTGAGGAAGATGGTGTGGAAGATGAATAC
rJMSF035M19+                                      AAGCTGAGGAAGATGGTGTGGAAGATGAATAC
rJMSF046B22+          GTCAAAGAGGNTGATCCNTCTACNGGTGAAGCTGAGGAAGATGGTGTGGAAGATGAATAC
rJMSF011L19+          GTCAAAGAGGTTGATCCATCTACTGGTGAAGCTGAGGAAGATGGTGTGGAAGATGAATAC
                      ____________________________________________________________
consensus             GTCAAAGAGGTTGATCCATCTACTGGTGAAGCTGAGGAAGATGGTGTGGAAGATGAATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          CAGCTAGAGGACCTTGAGGTGGTTGCTGCTGATTACATGCTGAAAGTGGGTGTCTCCAAT
rJMSF035M19+          CAGCTAGAGGACCTTGAGGTGGTTGCTGCTGATTACATGCTGAAAGTGGGTGTCTCCAAT
rJMSF046B22+          CAGCTAGAGGACCTTGAGGTGGTTGCTGCTGATTACATGCTGAAAGNGGGTGTCTCCAAT
rJMSF011L19+          CAGCTAGAGGACCTTGAGGTGGTTGCTGCTGATTACATGCTGAAAGTGGGTGTCTCCAAT
                      ____________________________________________________________
consensus             CAGCTAGAGGACCTTGAGGTGGTTGCTGCTGATTACATGCTGAAAGTGGGTGTCTCCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          TTTAGGAATGCGTGGGAAACAATGGGCCCTGATTGTGAGCGTGTAGATGAATATGGTCTT
rJMSF035M19+          TTTAGGAATGCGTGGGAAACAATGGGCCCTGATTGTGAGCGTGTAGATGAATATGGTCTT
rJMSF046B22+          TTTAGGAATGCGTGGGAAACAANGGGCCCTGATTGTGAGCGTGTAGATGAATATGGTCTT
rJMSF011L19+          TTTAGGAATGCGTGGGAAACAATGGGCCCTGATTGTGAGCGTGTAGATGAATATGGTCTT
                      ____________________________________________________________
consensus             TTTAGGAATGCGTGGGAAACAATGGGCCCTGATTGTGAGCGTGTAGATGAATATGGTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          GGCCCTAGGGATAGCTTGGCTGAAGCTGTTAATGCAGTCATAAACCTTCTTGGCATGCAA
rJMSF035M19+          GGCCCTAGGGATAGCTTGGCTGAAGCTGTTAATGCAGTCATAAACCTTCTTGGCATGCAA
rJMSF046B22+          GGCCNTAGGGATAGCTNGGCNGAAGCTGTTAATGCAGTCATAAACCTTCTTGGCATGCAA
rJMSF011L19+          GGCCCTAGGGATAGCTTGGCTGAAGCTGTTAATGCAGTCATAAACCTTCTTGGCATGCAA
                      ____________________________________________________________
consensus             GGCCCTAGGGATAGCTTGGCTGAAGCTGTTAATGCAGTCATAAACCTTCTTGGCATGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          CCCTGTGAGGGCACAGAGGTTGTCCCTAACAATTCAAGATCGCACACGTGTTTATTATCT
rJMSF035M19+          CCCTGTGAGGGCACAGAGGTTGTCCCTAACAATTCAAGATCGCACACGTGTTTATTATCT
rJMSF046B22+          CCCTGTGAGGGCACAGAGGTTGTCCCTANCAATTCAAGATCGCACACGTGTTTATTATCT
rJMSF011L19+          CCCTGTGAGGGCACAGAGGTTGTCCCTAACAATTCAAGATCGCACACGTGTTTATTATCT
                      ____________________________________________________________
consensus             CCCTGTGAGGGCACAGAGGTTGTCCCTAACAATTCAAGATCGCACACGTGTTTATTATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          GGTGTGTACATAGGCAGTGCTAAGGTTCTTGTGCGGTTATCATTTGGAATTGATGGGCCA
rJMSF035M19+          GGTGTGTACATAGGCAGTGCTAAGGTTCTTGTGCGGTTATCATTTGGAATTGATGGGCCA
rJMSF046B22+          GGTGTGTACATAGGCAGTGCTAAGGTTCTTGTGCGGTTATCATTTGGAATTGATGGGCCA
rJMSF011L19+          GGTGTGTACATAGGCAGTGCTAAGGTTCTTGTGCGGTTATCATTTGGAATTGATGGGCCA
                      ____________________________________________________________
consensus             GGTGTGTACATAGGCAGTGCTAAGGTTCTTGTGCGGTTATCATTTGGAATTGATGGGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          AAAGAGGTTGCCATGAAGTTGGCAGTTAGATCTGAAGATCTATCCATCAGTGATGCCATT
rJMSF035M19+          AAAGAGGTTGCCATGAAGTTGGCAGTTAGATCTGAAGATCTATCCATCAGTGATGCCATT
rJMSF046B22+          AAAGAGGTTGCCATGAAGTTGGCAGTTAGATCNGAAGATCTATCCATCAGTGATGCCATT
rJMSF011L19+          AAAGAGGTTGCCATGAAGTTGGCAGTTAGATCTGAAGATCTATCCATCAGTGATGCCATT
                      ____________________________________________________________
consensus             AAAGAGGTTGCCATGAAGTTGGCAGTTAGATCTGAAGATCTATCCATCAGTGATGCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038K07+          CATGAAATTGTGGCAAGTGGTTAGTT                                  
rJMSF035M19+          CATGAAATTGTGGCAAGTGGTTAGTTACCTACTTACCTTACATACGGAAAGGTGAATATT
rJMSF046B22+          CATGAAATTGTGGCAAGTGGTTAGNTACCTACTTACCTTACATACGGAAAGGTGAATATT
rJMSF011L19+          CATGAAATTGTGGCAAGTGGTTAGTTACCTACTTACCTTACATACGGAAAGGTGAATATT
                      ____________________________________________________________
consensus             CATGAAATTGTGGCAAGTGGTTAGTTACCTACTTACCTTACATACGGAAAGGTGAATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035M19+          TGCATTTTTACCCGGTCAAGAACTCAGGAGATTCATTTATGTTTTTGAGGGAACACTTGT
rJMSF046B22+          TGCATTTTTACCCGGTCAAGAACTCAGGAGATTCATTTATGTTTTTGAGGGAACACTTGT
rJMSF011L19+          TGCATTTTTACCCGGTCAAGAACTCAGGAGATTCATTTATGTTTTTGAGGGAACACTTGT
                      ____________________________________________________________
consensus             TGCATTTTTACCCGGTCAAGAACTCAGGAGATTCATTTATGTTTTTGAGGGAACACTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035M19+          GTTAACTACAAAATCACCATCTTGGCATATTTTCTGAAGCATAGGAGATTGGTTTAGTAA
rJMSF046B22+          GTTAACTACAAAATCACCATCTTGGCATATTTTCTGAAGCATAGGAGATTGGTTTAGTAA
rJMSF011L19+          GTTAACTACAAAATCACCATCTTGGCATATTTTCTGAAGCATAGGAGATTGGTTTAGTAA
                      ____________________________________________________________
consensus             GTTAACTACAAAATCACCATCTTGGCATATTTTCTGAAGCATAGGAGATTGGTTTAGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035M19+          TTGTTGTGTATTCGTTTTAAATTTTGAAACCAGTATGATTTCCTCTCATTGAT       
rJMSF046B22+          TTGTNGTGTANTCGTTTTAAATTTTGAAAACAGTATGATTTCCTCTCATTGAT       
rJMSF011L19+          TTGTTGTGTATTCGTTTTAAATTTTG-AAACAGTATGATTTCCTCTCATTGATATATTCT
                      ____________________________________________________________
consensus             TTGTTGTGTATTCGTTTTAAATTTTGAAAACAGTATGATTTCCTCTCATTGATATATTCT