Contig 005630:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011B17Sequence245005630 (2)ref|XP_009800693.1|5e-31PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial687005630 (2)ref|XP_004233832.2|2e-48PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial

Alignment

This contig is upended


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JMSF011B17-                                            GAATGGGAATCAAGGGTTTTATCCTAT
rJMSF011B17+                                           GAATGGGAATCAAGGGTTTTATCCTAT
                      ____________________________________________________________
consensus                                              GAATGGGAATCAAGGGTTTTATCCTAT
 
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JMSF011B17-           GATTTTCGTGTTCCAGACCACTTGATTGAAGCCTACTGCAGAAAAGGTCTGCTGGGGAAA
rJMSF011B17+          GATTTTCGTGTTCCAGACCACTTGATTGAAGCCTACTGCAGAAAAGGTCTGCTGGGGAAA
                      ____________________________________________________________
consensus             GATTTTCGTGTTCCAGACCACTTGATTGAAGCCTACTGCAGAAAAGGTCTGCTGGGGAAA
 
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JMSF011B17-           GCTGAAGCAGTTTTAGAACGAGGAATAGCTAAAGGCGGGGTCCCTTCAGCTGCTACATGG
rJMSF011B17+          GCTGAAGCAGTTTTAGAACGAGGAATAGCTAAAGGCGGGGTCCCTTCAGCTGCTACATGG
                      ____________________________________________________________
consensus             GCTGAAGCAGTTTTAGAACGAGGAATAGCTAAAGGCGGGGTCCCTTCAGCTGCTACATGG
 
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JMSF011B17-           TGTTACATGGCAGGCGGGTATCTCCTGGATGGCCAAGAACCGAAAGCTCTGGAAGCTTTG
rJMSF011B17+          TGTTACATGGCAGGCGGGTATCTCCTGGATGGCCAAGAACCGAAAGCTCTGGAAGCTTTG
                      ____________________________________________________________
consensus             TGTTACATGGCAGGCGGGTATCTCCTGGATGGCCAAGAACCGAAAGCTCTGGAAGCTTTG
 
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JMSF011B17-           AATAAAGCCGTATCCATATGTCCACCCGATTTTAATCC                      
rJMSF011B17+          AATAAAGCCGTATCCATATGTCCACCCGATTTTAATCCTAGTAAGGATACCCTGATTAAA
                      ____________________________________________________________
consensus             AATAAAGCCGTATCCATATGTCCACCCGATTTTAATCCTAGTAAGGATACCCTGATTAAA
 
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rJMSF011B17+          TGTGTGGAATATCTTGAAAAGCATGGCAATGTGGAGAATGCTGAGGAGTTGATACAATCT
                      ____________________________________________________________
consensus             TGTGTGGAATATCTTGAAAAGCATGGCAATGTGGAGAATGCTGAGGAGTTGATACAATCT
 
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rJMSF011B17+          TTAGAAGATATACGAGCTTTCTCACCAATCTTACGTGAAAAACTATCTTGTTTGATTAAG
                      ____________________________________________________________
consensus             TTAGAAGATATACGAGCTTTCTCACCAATCTTACGTGAAAAACTATCTTGTTTGATTAAG
 
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rJMSF011B17+          GATCCATCCATAGCTGAGGCAGAGCAAGGTGGTGCCTAGGTGATATGATCTTGGATTGTC
                      ____________________________________________________________
consensus             GATCCATCCATAGCTGAGGCAGAGCAAGGTGGTGCCTAGGTGATATGATCTTGGATTGTC
 
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rJMSF011B17+          ACGAGACAACAGCTTGGCAAGGTCAATGATGTTTCTTGAGAGTACACCATGGGTATCATG
                      ____________________________________________________________
consensus             ACGAGACAACAGCTTGGCAAGGTCAATGATGTTTCTTGAGAGTACACCATGGGTATCATG
 
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rJMSF011B17+          ATTATTTGATAGTTAACGTTAACATACTTTTTCTTTTTTTGTGTACTCAAGGTTTTCACT
                      ____________________________________________________________
consensus             ATTATTTGATAGTTAACGTTAACATACTTTTTCTTTTTTTGTGTACTCAAGGTTTTCACT
 
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rJMSF011B17+          GTCAGACACAGTGACTAATCTCCTTGCTGATTGTATCTATCACTGCTTTTATTAGATTTT
                      ____________________________________________________________
consensus             GTCAGACACAGTGACTAATCTCCTTGCTGATTGTATCTATCACTGCTTTTATTAGATTTT
 
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rJMSF011B17+          AGATTGGACCCCTGACCATTCTCCAGGGGCATTTGGTTTGTGGAGAGTTGTGGGGTGGTT
                      ____________________________________________________________
consensus             AGATTGGACCCCTGACCATTCTCCAGGGGCATTTGGTTTGTGGAGAGTTGTGGGGTGGTT