Contig 005629:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011A11Sequence168000646 (2)693005629 (2)ref|XP_009614358.1|177PREDICTED: uncharacterized protein LOC104107297 [Nicotiana tomentosiformis]
JMSF011N03Sequence385000646 (2)ref|XP_009627275.1|3e-08PREDICTED: uncharacterized protein LOC104117858 isoform X2 [Nicotiana tomentosi201005629 (2)ref|XP_009613415.1|1e-24PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104106550 [Nicotiana

Alignment

This contig is upended


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rJMSF011N03+                                                                CAAAGA
                      ____________________________________________________________
consensus                                                                   CAAAGA
 
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rJMSF011N03+          GAGCTCTTGTGGTTTATGGAGGTTGGGAATGTTGTTCCACCATCACAACACAAGATCCGG
rJMSF011A11+                                     AATGTTGTTCCACCATCACAACACAAGATCCGG
                      ____________________________________________________________
consensus             GAGCTCTTGTGGTTTATGGAGGTTGGGAATGTTGTTCCACCATCACAACACAAGATCCGG
 
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rJMSF011N03+          AACAAGGAGAACAAAACACCAAAGCAAATATTCGCAGAGGAGCACAGGGAACTATTGAAA
rJMSF011A11+          AACAAGGAGAACAAAACACCAAAGCAAATATTCGCAGAGGAGCACAGGGAACTATTGAAA
                      ____________________________________________________________
consensus             AACAAGGAGAACAAAACACCAAAGCAAATATTCGCAGAGGAGCACAGGGAACTATTGAAA
 
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rJMSF011N03+          GAGGGCGAGAAGTGGATGACAGACACCGCAACATCCTGCATGCTTGTCGCAACTTTGATC
rJMSF011A11+          GAGGGCGAGAAGTGGATGACAGACACCGCAACATCCTGCATGCTTGTCGCAACTTTGATC
                      ____________________________________________________________
consensus             GAGGGCGAGAAGTGGATGACAGACACCGCAACATCCTGCATGCTTGTCGCAACTTTGATC
 
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rJMSF011N03+          GCCACCATGGTTTTC                                             
rJMSF011A11+          GCCACCATGGTTTTCGCCGCAGCCTTCACCGTGCCCGGCGGCAGTAACGGCGACACCGGC
                      ____________________________________________________________
consensus             GCCACCATGGTTTTCGCCGCAGCCTTCACCGTGCCCGGCGGCAGTAACGGCGACACCGGC
 
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rJMSF011A11+          ACTCCCGTTTTCATAAAGAGGAGCAGTTTTACAGTTTTCATGATTTCAGATGCGGTGGCA
                      ____________________________________________________________
consensus             ACTCCCGTTTTCATAAAGAGGAGCAGTTTTACAGTTTTCATGATTTCAGATGCGGTGGCA
 
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rJMSF011A11+          ATGATTTGCTCAATCATCTCTATCATCATGTTCTTGTCCATACTCATTTCGCGCTTCAGA
                      ____________________________________________________________
consensus             ATGATTTGCTCAATCATCTCTATCATCATGTTCTTGTCCATACTCATTTCGCGCTTCAGA
 
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rJMSF011A11+          CAAGACGATTTTCTTGCGTCGTTGCCTTTAAAGTTGTTGGTCGGACTCACAACACTCTTT
                      ____________________________________________________________
consensus             CAAGACGATTTTCTTGCGTCGTTGCCTTTAAAGTTGTTGGTCGGACTCACAACACTCTTT
 
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rJMSF011A11+          GTCTCAATAGTTGGGATGTTGGTGGCCTTCGCCGTGGCCTTCTCTTTGATCTTTGACAAG
                      ____________________________________________________________
consensus             GTCTCAATAGTTGGGATGTTGGTGGCCTTCGCCGTGGCCTTCTCTTTGATCTTTGACAAG
 
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rJMSF011A11+          GCTTGGCAGCCAAAGCTGATCGTGGCTTTCATTGTTGCTCCATTTGCTTTGTTTCTGTTG
                      ____________________________________________________________
consensus             GCTTGGCAGCCAAAGCTGATCGTGGCTTTCATTGTTGCTCCATTTGCTTTGTTTCTGTTG
 
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rJMSF011A11+          CTAAATTTCAACCTCTGGTTTGACACAATCCTAGCACTATTGCTTGTTGTTAAAATTAAA
                      ____________________________________________________________
consensus             CTAAATTTCAACCTCTGGTTTGACACAATCCTAGCACTATTGCTTGTTGTTAAAATTAAA
 
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rJMSF011A11+          GTTGGCTCATTCAAGAAGCTTTACTTTGGATGAACCAACAAAAAAAGGAGTGTTTGGAGA
                      ____________________________________________________________
consensus             GTTGGCTCATTCAAGAAGCTTTACTTTGGATGAACCAACAAAAAAAGGAGTGTTTGGAGA
 
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rJMSF011A11+          TTAGTTAGCATATTATTGTATTAAATACTTTGACCAGTTAGTTACTTTATGTTGAAAAAT
                      ____________________________________________________________
consensus             TTAGTTAGCATATTATTGTATTAAATACTTTGACCAGTTAGTTACTTTATGTTGAAAAAT