Contig 005628:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046J15Sequence521006202 (4)ref|XP_011094134.1|1e-26PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A421005628 (3)gb|KJB82438.1|1e-29hypothetical protein B456_013G195600 [Gossypium raimondii]
JMSF011A01Sequence652005628 (3)ref|XP_009598646.1|8e-40PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A
JMSF036D04Sequence687006202 (4)ref|XP_010320756.1|2e-54PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A661005628 (3)ref|XP_009598646.1|1e-62PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A

Alignment

This contig is upended


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rJMSF036D04+                                                      TTTCAAACGATTTGAA
                      ____________________________________________________________
consensus                                                         TTTCAAACGATTTGAA
 
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rJMSF036D04+          GATAACCGATATTCTGTTGGACCAGAACCTCGTTGCCAAAATTAGCAGCTTTAACCTACC
                      ____________________________________________________________
consensus             GATAACCGATATTCTGTTGGACCAGAACCTCGTTGCCAAAATTAGCAGCTTTAACCTACC
 
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rJMSF036D04+          CATTCTGGATGAGAGCACAGGAAAGGCCGGCCTTCATGATATTCCCAGTGGTTCCAAGGA
rJMSF011A01+               TGGATGAGAGCACAGGAAAGGCCGGCCTTCATGATATTCCCANTGGTTCCAAGGA
                      ____________________________________________________________
consensus             CATTCTGGATGAGAGCACAGGAAAGGCCGGCCTTCATGATATTCCCAGTGGTTCCAAGGA
 
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rJMSF036D04+          GGTTAATGGTGCAAGGGAAAGATACAATGAAAAGCTGGATGTGTATGACTTTGGTACAAT
rJMSF011A01+          GGTTAATGGTGCAAGGGAAAGATACAATGAAAAGCTGGATGTGTATGACTTTGGTACAAT
                      ____________________________________________________________
consensus             GGTTAATGGTGCAAGGGAAAGATACAATGAAAAGCTGGATGTGTATGACTTTGGTACAAT
 
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rJMFF046J15+                                              CAAGAAGGATGTGAAGATCCTTAA
rJMSF036D04+          ATTACTAGAAATCATTACAGGAAGGAGGATAAATACCAAGAAGGATGTGAAGATCCTTAA
rJMSF011A01+          ATTACTAGAAATCATTACAGGAAGGAGGATAAATACCAAGAAGGATGTGAAGATCCTTAA
                      ____________________________________________________________
consensus             ATTACTAGAAATCATTACAGGAAGGAGGATAAATACCAAGAAGGATGTGAAGATCCTTAA
 
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rJMFF046J15+          AGAACAGTTGCAAGCAAGCCTCACAGGCGATGATGCATGGAGAAGGAGTGTGGTTGATCC
rJMSF036D04+          AGAACAGTTGCAAGCAAGCCTCACAGGCGATGATGCATGGAGAAGGAGTGTGGTTGATCC
rJMSF011A01+          AGAACAGTTGCAAGTAAGCCTCNCAGGCGATGATGCATGG---AGGAGTGTGGTTGATCC
                      ____________________________________________________________
consensus             AGAACAGTTGCAAGCAAGCCTCACAGGCGATGATGCATGGAGAAGGAGTGTGGTTGATCC
 
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rJMFF046J15+          GAGGGTCAAGAATTCGAGTTCAGATGAATCGGTGAAGACGATGGTGGAGATTTGCTACAG
rJMSF036D04+          GAGGGTCAAGAATTCGAGTTCAGATGAATCGGTGAAGACGATGGTGGAGATTTGCTACAG
rJMSF011A01+          GAGGGTCAAGAATTCGAGTTCAGATGAATCGGTGAAGNCGATGGTGGAGATTTGCTACAG
                      ____________________________________________________________
consensus             GAGGGTCAAGAATTCGAGTTCAGATGAATCGGTGAAGACGATGGTGGAGATTTGCTACAG
 
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rJMFF046J15+          ATGTTTGCTCGAGGATCCTGCAGATAGGCCGTCGGTTGAGGATGTGTTGTGGAATTTGCA
rJMSF036D04+          ATGTTTGCTCGAGGATCCTGCAGATAGGCCGTCGGTTGAGGATGTGTTGTGGAATTTGCA
rJMSF011A01+          ATGTTTGCTCGAGGATCCTGCAGATAGNCCGTCGGTTGNGGATNTGTTGTGGAATTTGCA
                      ____________________________________________________________
consensus             ATGTTTGCTCGAGGATCCTGCAGATAGGCCGTCGGTTGAGGATGTGTTGTGGAATTTGCA
 
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rJMFF046J15+          GTTTGCGGCTCAGGTCCAAGACGCGTGTAGAGGAGATTCTCAGAGCAGCGATAGCTCTCC
rJMSF036D04+          GTTTGCGGCTCAGGTCCAAGACGCGTGTAGAGGAGATTCTCAGAGCAGCGATAGCTCTCC
rJMSF011A01+          GTTTGCGGCTCAGGTCCAAGACGCGTGTAGAGGAGATTCTCAGAGCAGCGATAGCTCTCC
                      ____________________________________________________________
consensus             GTTTGCGGCTCAGGTCCAAGACGCGTGTAGAGGAGATTCTCAGAGCAGCGATAGCTCTCC
 
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rJMFF046J15+          CATTTCGCCTTTTCAGCCTTCACGCCAGATAGCCATTCGATAGCATGAGTGCATGAGAGG
rJMSF036D04+          CATTTCGCCTTTTCAGCCTTCACGCCAGATAGCCATTCGATAGCATGAGTGCATGAGAGG
rJMSF011A01+          CATTTCGCCTTTTCANCCTTCACNCCAGATAGCCATTCGATAGCATGAGTGCATGAGAGG
                      ____________________________________________________________
consensus             CATTTCGCCTTTTCAGCCTTCACGCCAGATAGCCATTCGATAGCATGAGTGCATGAGAGG
 
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rJMFF046J15+          TGTTTTTGAGGAAGCAATGGCTATGGCTTTGCTTCAGAAGATTGAAGAGCTTTGTACTAA
rJMSF036D04+          TGTTTTTGAGGAAGCAATGGCTATGGCTTTGCTTCAGAAGATTGAAGAGCTTTGTACTAA
rJMSF011A01+          TGTTTTTGANGAAGCAATGNCTATGGCTNTGCTTCAGAAGANTGCAGAGCTTTGTACTAA
                      ____________________________________________________________
consensus             TGTTTTTGAGGAAGCAATGGCTATGGCTTTGCTTCAGAAGATTGAAGAGCTTTGTACTAA
 
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rJMFF046J15+          TGAAAATGGTGAATGCAAATAGTTATCAGTTTTGT                         
rJMSF036D04+          TGAAAATGGTGAATGCAAATAGTTATCAGTTTTGTACAAAAAACC               
rJMSF011A01+          TGAAAATNGTGAATGCAAATAGTTATCAGTTTTGTNCAAAAAACCATTTGATCTGCAGAA
                      ____________________________________________________________
consensus             TGAAAATGGTGAATGCAAATAGTTATCAGTTTTGTACAAAAAACCATTTGATCTGCAGAA
 
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rJMSF011A01+          TATATAGAACAGTATCTTCTCCTTATATGTCACCAAAATGTCTACATGAGAGGNTCAAAA
                      ____________________________________________________________
consensus             TATATAGAACAGTATCTTCTCCTTATATGTCACCAAAATGTCTACATGAGAGGNTCAAAA