| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014F16 | Sequence | 466 | 005627 (9) | ref|XP_009620266.1| | 5e-30 | PREDICTED: probable CCR4-associated factor 1 homolog 7 [Nicotiana tomentosiform | 820 | 005627 (9) | ref|XP_009801027.1| | 4e-156 | PREDICTED: probable CCR4-associated factor 1 homolog 7 [Nicotiana sylvestris] r |
| JMSF010P01 | Sequence | 333 | 005627 (9) | 775 | 005627 (9) | ref|XP_009801027.1| | 7e-135 | PREDICTED: probable CCR4-associated factor 1 homolog 7 [Nicotiana sylvestris] r | |||
| JMSF038D19 | Sequence | 660 | 005627 (9) | ref|XP_002527306.1| | 3e-60 | ccr4-associated factor, putative [Ricinus communis] gb|EEF35058.1| ccr4-associat | 895 | 005627 (9) | ref|XP_009801027.1| | 6e-166 | PREDICTED: probable CCR4-associated factor 1 homolog 7 [Nicotiana sylvestris] r |
| JMSF038N12 | Sequence | 641 | 010829 (7) | ref|XP_009598879.1| | 4e-64 | PREDICTED: acyl carrier protein 2, mitochondrial-like [Nicotiana tomentosiformi | 845 | 005627 (9) | ref|XP_009801027.1| | 5e-156 | PREDICTED: probable CCR4-associated factor 1 homolog 7 [Nicotiana sylvestris] r |
| JMSF040C23 | Sequence | 659 | 005627 (9) | ref|XP_002527306.1| | 3e-60 | ccr4-associated factor, putative [Ricinus communis] gb|EEF35058.1| ccr4-associat | 805 | 005627 (9) | ref|XP_009801027.1| | 7e-143 | PREDICTED: probable CCR4-associated factor 1 homolog 7 [Nicotiana sylvestris] r |
This contig is upended
. : . : . : . : . : . :
JMSF040C23- AGGCCTGCAGACCCCCATTTCC
JMSF010P01- AGGCCTGCAGACCCCCATTTCC
JMSF038D19- GACACAAGGCCTGCAGACCCCCATTTCC
____________________________________________________________
consensus GACACAAGGCCTGCAGACCCCCATTTCC
. : . : . : . : . : . :
JMSF040C23- CTTTTTCTTTCTCTTCATCTTCTTCCTCTCACTAAACTCTCTCTCTCTCTCCCTTTCTCT
JMFF014F16- AAACTCTCTCTCTCTCTCCCTTTCTCT
JMSF010P01- CTTTTTCTTTCTCTTCATCTTCTTCCTCTCACTAAACTCTCTCTCTCTCTCCCTTTCTCT
JMSF038D19- CTTTTTCTTTCTCTTCATCTTCTTCCTCTCACTAAACTCTCTCTCTCTCTCCCTTTCTCT
____________________________________________________________
consensus CTTTTTCTTTCTCTTCATCTTCTTCCTCTCACTAAACTCTCTCTCTCTCTCCCTTTCTCT
. : . : . : . : . : . :
JMSF040C23- CTCTCTCTCTCCNTGTTTCTCTCTCTTAAATTGACTCTTCCGACTTCTCTCAGATCAGGC
JMFF014F16- CTCTCTCTCTCCCTGTTTCTCTCTCTTAAATTGACTCTTCCGACTTCTCTCAGATCAGGC
JMSF010P01- CTCTCTCTCTCCCTGTTTCTCTCTCTTAAATTGACTCTTCCGACTTCTCTCAGATCAGGC
JMSF038D19- CTCTCTCTCTCCCTGTTTCTCTCTCTTAAATTGACTCTTCCGACTTCTCTCAGATCAGGC
____________________________________________________________
consensus CTCTCTCTCTCCCTGTTTCTCTCTCTTAAATTGACTCTTCCGACTTCTCTCAGATCAGGC
. : . : . : . : . : . :
JMSF040C23- TAGCTATATTGGCTTTTTGGATTGTGCTAATAAAAGGATTAAAAGCAAATCTAGCTGAAA
JMFF014F16- TAGCTATATTGGCTTTTTGGATTGTGCTAATAAAAGGATTAAAAGCAAATCTANCTGAAA
JMSF010P01- TAGCTATATTGGCTTTTTGGATTGTGCTAATAAAAGGATTAAAAGCAAATCTAGCTGAAA
JMSF038D19- TAGCTATATTGGCTTTTTGGANTGTGCTAATAAAAGGATTAAAAGCAAATCTAGCTGAAA
____________________________________________________________
consensus TAGCTATATTGGCTTTTTGGATTGTGCTAATAAAAGGATTAAAAGCAAATCTAGCTGAAA
. : . : . : . : . : . :
JMSF040C23- CCCCAACAAAAAGGATGAATTGGTCAAATCCCAAGCCTGCTTGATCCATCTAATTAAATA
JMFF014F16- CCCCAACAAAAAGGATGAATTGGTCAAATCCCAAGCCTGCTTGATCCATCTAATTAAATA
JMSF010P01- CCCCAACAAAAAGGATGAATTGGTCAAATCCCAAGCCTGCTTGATCCATCTAATTAAATA
JMSF038D19- CCCCAACAAAAAGGATGAATTGGTCAAATCCCAAGCCTGCTTGATCCATCTAATTAAATA
____________________________________________________________
consensus CCCCAACAAAAAGGATGAATTGGTCAAATCCCAAGCCTGCTTGATCCATCTAATTAAATA
. : . : . : . : . : . :
JMSF040C23- ACANGGCCATAATAATTGATTCACTGAAAAACCTGCGCTTCATTTGTGACCGATACAAAT
JMFF014F16- ACAAGGCCATAATAATTGATTCACTGAAAAACCTGCGCTTCATTTGTGACCGATACAAAT
JMSF010P01- ACAAGGCCATAATAANTGATTCACTGAAAAACCTGCGCTTCATTTGTGACCGATACAAAT
JMSF038D19- ACANGGCCATAATAATTGATTCACTGAAAAACCTGCGCTTCATTTGTGACCGATACAAAT
____________________________________________________________
consensus ACAAGGCCATAATAATTGATTCACTGAAAAACCTGCGCTTCATTTGTGACCGATACAAAT
. : . : . : . : . : . :
JMSF040C23- ATGTCTGAGTTGCTGAAAAATGATTCTATCCAAATTAGAGAGGTTTGGAATGATAATCTT
JMFF014F16- ATGTCTGAGTTGCTGAAAAATGATTCTATCCAAATTAGAGAGGTTTGGAATGATAATCTT
JMSF010P01- ATGTCTGAG
JMSF038D19- ATGTCTGAGTTGCTGAAAAATGATTCTATCCAAATTAGAGAGGTTTGGAATGATAATCTT
____________________________________________________________
consensus ATGTCTGAGTTGCTGAAAAATGATTCTATCCAAATTAGAGAGGTTTGGAATGATAATCTT
. : . : . : . : . : . :
JMSF040C23- GAAAAAGAGTTTGCTCTTATCCGTGAAATCGTTGATGAGTATCCTTTTATCGCCNTGGAC
JMFF014F16- GAAAAAGAGTTTGCTCTTATCCGNGAAATCGTTGATGAGTATCCTTTTATCGCCATGGAC
JMSF038D19- GAAAAAGAGTTTGCTCTTATCCGTGAAATCGTTGATGAGTATCCTTTTATCGCCNTGGAC
rJMSF038N12+ TTTTATCGCCATGGAC
rJMFF014F16+ ATCGCCATGGAC
rJMSF038D19+ AAAAAGAGTTTGCTCTTATCCGTGAAATCGTTGATGAGTATCCTTTTATCGCCATGGAC
____________________________________________________________
consensus GAAAAAGAGTTTGCTCTTATCCGTGAAATCGTTGATGAGTATCCTTTTATCGCCATGGAC
. : . : . : . : . : . :
JMSF040C23- ACTGAGTTTCCCGGGGTAGTTCTTCGGCCTGTTGGCAACTTCAAGAACATTAACGAGTAT
JMFF014F16- ACTGAGTTTCCCGGGGTAGTTCTTCGGCCTGTTGGCAACTTCAAGAACATTAACGAGTAT
JMSF038D19- ACTGAGTTTCCCGGGGTAGTTCTTCGGCCTGTTGGCAACTTCAAGAACATTAACGAGTAT
rJMSF038N12+ ACTGAGTTTCCCGGGGTAGTTCTTCGGCCTGTTGGCAACTTCAAGAACATTAACGAGTAT
rJMFF014F16+ ACTGAGTTTCCCGGGGTAGTTCTTCGGCCTGTTGGCAACTTCAAGAACATTAACGAGTAT
rJMSF038D19+ ACTGAGTTTCCCGGGGTAGTTCTTCGGCCTGTTGGCAACTTCAAGAACATTAACGAGTAT
rJMSF040C23+ GCAACTTCAAGAACATTAACGAGTAT
____________________________________________________________
consensus ACTGAGTTTCCCGGGGTAGTTCTTCGGCCTGTTGGCAACTTCAAGAACATTAACGAGTAT
. : . : . : . : . : . :
JMSF040C23- AACTATCAGACGTTGAAGGATAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACA
JMFF014F16- AACTATCANACGTTGAAG
JMSF038D19- AACTATCAGACGTTGAAGGATAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACA
rJMSF038N12+ AACTATCAGACGTTGAAGGATAATGTTGATATGTTGAAGTNGATTCAATTAGGTCTCACA
rJMFF014F16+ AACTATCAGACGTTGAAGGATAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACA
rJMSF038D19+ AACTATCAGACGTTGAAGGATAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACA
rJMSF040C23+ AACTATCAGACGTTGAAGGATAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACA
rJMSF010P01+ TCAGACGNTGAAGGATAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACA
____________________________________________________________
consensus AACTATCAGACGTTGAAGGATAATGTTGATATGTTGAAGTTGATTCAATTAGGTCTCACA
. : . : . : . : . : . :
JMSF040C23- TTTTCAGATGAAGATGGTAACTTGCCTACNTGTGGAACAGATCACTATTGCATTTGGCAG
JMSF038D19- TTTTCAGATGAAGATGGTAACTTGCCTACNTGTGGAACAGATCACTATTGCATTTGGCAG
rJMSF038N12+ TTTTCAGATGAAGATGGTAACTTGCCTACATGTGGAACAGATCACTATTGCATTTGGCAG
rJMFF014F16+ TTTTCAGATGAAGATGGTAACTTGCCTACATGTGGAACAGATCACTATTGCATTTGGCAG
rJMSF038D19+ TTTTCAGATGAAGATGGTAACTTGCCTACATGTGGAACAGATCACTATTGCATTTGGCAG
rJMSF040C23+ TTTTCAGATGAAGATGGTAACTTGCCTACATGTGGAACAGATCACTATTGCATTTGGCAG
rJMSF010P01+ TTTTCAGATGAAGATGGTAACTTGCCTACATGTGGAACAGATCACTATTGCATTTGGCAG
____________________________________________________________
consensus TTTTCAGATGAAGATGGTAACTTGCCTACATGTGGAACAGATCACTATTGCATTTGGCAG
. : . : . : . : . : . :
JMSF040C23- TTCAACTTTCGTGAATTTGACATGAGCGAGG
JMSF038D19- TTCAACTTTCGTGAATTTGACATGAGCGAGGA
rJMSF038N12+ TTCAACTTTCGTGAATTTGACATGAGCGAGGATATCTTTGCAAATGATTCCATCGACCTG
rJMFF014F16+ TTCAACTTTCGTGAATTTGACATGAGCGAGGATATCTTTGCAAATGATTCCATCGACCTG
rJMSF038D19+ TTCAACTTTCGTGAATTTGACATGAGCGAGGATATCTTTGCAAATGATTCCATCGACCTG
rJMSF040C23+ TTCAACTTTCGTGAATTTGACATGAGCGAGGATATCTTTGCAAATGATTCCATCGACCTG
rJMSF010P01+ TTCAACTTTCGTGAATTTGACATGAGCGAGGATATCTTTGCAAATGATTCCATCGACCTG
____________________________________________________________
consensus TTCAACTTTCGTGAATTTGACATGAGCGAGGATATCTTTGCAAATGATTCCATCGACCTG
. : . : . : . : . : . :
rJMSF038N12+ TTGAGGCAATCTGGCATTGATTTCAAGAAGAACAATGAAATGGGGATCGATGCAACCCGC
rJMFF014F16+ TTGAGGCAATCTGGCATTGATTTCAAGAAGAACAATGAAATGGGGATCGATGCAACCCGC
rJMSF038D19+ TTGAGGCAATCTGGCATTGATTTCAAGAAGAACAATGAAATGGGGATCGATGCAACCCGC
rJMSF040C23+ TTGAGGCAATCTGGCATTGATTTCAAGAAGAACAATGAAATGGGGATCGATGCAACCCGC
rJMSF010P01+ TTGAGGCAATCTGGCATTGATTTCAAGAAGAACAATGAAATGGGGATCGATGCAACCCGC
____________________________________________________________
consensus TTGAGGCAATCTGGCATTGATTTCAAGAAGAACAATGAAATGGGGATCGATGCAACCCGC
. : . : . : . : . : . :
rJMSF038N12+ TTTGGTGAGCTACTGATGTCGTCTGGTATTGTATTGAACGATGGTGTGCAATGGGTGACA
rJMFF014F16+ TTTGGTGAGCTACTGATGTCGTCTGGTATTGTATTGAACGATGGTGTGCAATGGGTGACA
rJMSF038D19+ TTTGGTGAGCTACTGATGTCGTCTGGTATTGTATTGAACGATGGTGTGCAATGGGTGACA
rJMSF040C23+ TTTGGTGAGCTACTGATGTCGTCTGGTATTGTATTGAACGATGGTGTGCAATGGGTGACA
rJMSF010P01+ TTTGGTGAGCTACTGATGTCGTCTGGTATTGTATTGAACGATGGTGTGCAATGGGTGACA
____________________________________________________________
consensus TTTGGTGAGCTACTGATGTCGTCTGGTATTGTATTGAACGATGGTGTGCAATGGGTGACA
. : . : . : . : . : . :
rJMSF038N12+ TTTCACAGTGGATACGACTTTGGGTACCTCCTCAAGCTATTAACCTGCAAGAATTTACCA
rJMFF014F16+ TTTCACAGTGGATACGACTTTGGGTACCTCCTCAAGCTATTAACCTGCAAGAATTTACCA
rJMSF038D19+ TTTCACAGTGGATACGACTTTGGGTACCTCCTCAAGCTATTAACCTGCAAGAATTTACCA
rJMSF040C23+ TTTCACAGTGGATACGACTTTGGGTACCTCCTCAAGCTATTAACCTGCAAGAATTTACCA
rJMSF010P01+ TTTCACAGTGGATACGACTTTGGGTACCTCCTCAAGCTATTAACCTGCAAGAATTTACCA
____________________________________________________________
consensus TTTCACAGTGGATACGACTTTGGGTACCTCCTCAAGCTATTAACCTGCAAGAATTTACCA
. : . : . : . : . : . :
rJMSF038N12+ GATACCCAGAGTGGGTTCTTCGATTTGCTGAATATGTACTTCCCAATAGTGTACGACATT
rJMFF014F16+ GATACCCAGAGTGGGTTCTTCGATTTGCTGAATATGTACTTCCCAATAGTGTACGACATT
rJMSF038D19+ GATACCCAGAGTGGGTTCTTCGATTTGCTGAATATGTACTTCCCAATAGTGTACGACATT
rJMSF040C23+ GATACCCAGAGTGGGTTCTTCGATTTGCTGAATATGTACTTCCCAATAGTGTACGACATT
rJMSF010P01+ GATACCCAGAGTGGGTTCTTCGATTTGCTGAATATGTACTTCCCAATAGTGTACGACATT
____________________________________________________________
consensus GATACCCAGAGTGGGTTCTTCGATTTGCTGAATATGTACTTCCCAATAGTGTACGACATT
. : . : . : . : . : . :
rJMSF038N12+ AAGCACTTGATGAGGTTCTGCAATAGCCTCCACGGTGGGTTAAACAAACTCGCAGAGCTG
rJMFF014F16+ AAGCACTTGATGAGGTTCTGCAATAGCCTCCACGGTGGGTTAAACAAACTCGCAGAGCTG
rJMSF038D19+ AAGCACTTGATGAGGTTCTGCAATAGCCTCCACGGTGGGTTAAACAAACTCGCAGAGCTG
rJMSF040C23+ AAGCACTTGATGAGGTTCTGCAATAGCCTCCACGGTGGGTTAAACAAACTCGCAGAGCTG
rJMSF010P01+ AAGCACTTGATGAGGTTCTGCAATAGCCTCCACGGTGGGTTAAACAAACTCGCAGAGCTG
____________________________________________________________
consensus AAGCACTTGATGAGGTTCTGCAATAGCCTCCACGGTGGGTTAAACAAACTCGCAGAGCTG
. : . : . : . : . : . :
rJMSF038N12+ TTGGAGGTCGAGAGAATCGGGATCTGCCATCAAGCTGGTTCAGATAGCTTGCTCACCTCT
rJMFF014F16+ TTGGAGGTCGAGAGAATCGGGATCTGCCATCAAGCTGGTTCAGATAGCTTGCTCACCTCT
rJMSF038D19+ TTGGAGGTCGAGAGAATCGGGATCTGCCATCAAGCTGGTTCAGATAGCTTGCTCACCTCT
rJMSF040C23+ TTGGAGGTCGAGAGAATCGGGATCTGCCATCAAGCTGGTTCAGATAGCTTGCTCACCTCT
rJMSF010P01+ TTGGAGGTCGAGAGAATCGGGATCTGCCATCAAGCTGGTTCAGATAGCTTGCTCACCTCT
____________________________________________________________
consensus TTGGAGGTCGAGAGAATCGGGATCTGCCATCAAGCTGGTTCAGATAGCTTGCTCACCTCT
. : . : . : . : . : . :
rJMSF038N12+ TGCGCATTCAAGAAGTTGAAGGAAAACTTCTTTAGTGGCGCAACCGAGAAATATGCAGGT
rJMFF014F16+ TGCGCATTCAAGAAGTTGAAGGAAAACTTCTTTAGTGGCGCAACCGAGAAATATGCAGGT
rJMSF038D19+ TGCGCATTCAAGAAGTTGAAGGAAAACTTCTTTAGTGGCGCAACCGAGAAATATGCAGGT
rJMSF040C23+ TGCGCATTCAAGAAGTTGAAGGAAAACTTCTTTAGTGGCGCAACCGAGAAATATGCAGGT
rJMSF010P01+ TGCGCATTCAAGAAGTTGAAGGAAAACTTCTTTAGTGGCGCAACCGAGAAATATGCAGGT
____________________________________________________________
consensus TGCGCATTCAAGAAGTTGAAGGAAAACTTCTTTAGTGGCGCAACCGAGAAATATGCAGGT
. : . : . : . : . : . :
rJMSF038N12+ GTTCTGTATGGTCTCGGTGTTGAAAATGGTTCTGACAATAAATAGACTTAAGGAGGAGGT
rJMFF014F16+ GTTCTGTATGGTCTCGGTGTTGAAAATGGTTCTGACAATAAATAGACTTAAGGAGGAGGT
rJMSF038D19+ GTTCTGTATGGTCTCGGTGTTGAAAATGGTTCTGACAATAAATAGACTTAAGGAGGAGGT
rJMSF040C23+ GTTCTGTATGGTCTCGGTGTTGAAAATGGTTCTGACAATAAATAGACTTAAGGAGGAGGT
rJMSF010P01+ GTTCTGTATGGTCTCGGTGTTGAAAATGGTTCTGACAATAAATAGACTTAAGGAGGAGGT
____________________________________________________________
consensus GTTCTGTATGGTCTCGGTGTTGAAAATGGTTCTGACAATAAATAGACTTAAGGAGGAGGT
. : . : . : . : . : . :
rJMSF038N12+ AATGTACTTGTGAAGAAAAATAAGAAGATTAGAAGAGTTTATGTATGTTGAGTTGTGTAG
rJMFF014F16+ AATGTACTTGTGAAGAAAAATAAGAAGATTAGAAGAGTTTATGTATGTTGAGTTGTGTAG
rJMSF038D19+ AATGTACTTGTGAAGAAAAATAAGAAGATTAGAAGAGTTTATGTATGTTGAGTTGTGTAG
rJMSF040C23+ AATGTACTTGTGAAGAAAAATAAGAAGATTAGAAGAGTTTATGTATGTTGAGTTGTGTAG
rJMSF010P01+ AATGTACTTGTGAAGAAAAATAAGAAGATTAGAAGAGTTTATGTATGTTGAGTTGTGTAG
____________________________________________________________
consensus AATGTACTTGTGAAGAAAAATAAGAAGATTAGAAGAGTTTATGTATGTTGAGTTGTGTAG
. : . : . : . : . : . :
rJMSF038N12+ AAGAA-CATGTATCATGTCTGTAAGAAATT
rJMFF014F16+ AAGAA-CATGTATCATGTCTTTAAGAAAT
rJMSF038D19+ AAGAA-CATGTATCATGTCTGTAAGAAATTTAATTGTGATCAAATATCTG
rJMSF040C23+ AAGAA-CATGTATCATGTCTGTAAGAAATTTAATTGTGATCAAATATCTG
rJMSF010P01+ AAGAACCATGTATCATGTCTGTAAGAAATTTAATTGTGATCAAATATCTGTAACGACAAT
____________________________________________________________
consensus AAGAA-CATGTATCATGTCTGTAAGAAATTTAATTGTGATCAAATATCTGTAACGACAAT