| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008F06 | Sequence | 401 | 011927 (4) | gb|KDP26452.1| | 1e-18 | hypothetical protein JCGZ_17610 [Jatropha curcas] | 783 | 005621 (3) | gb|AIU48889.1| | 3e-93 | transducin/WD40 repeat-like superfamily protein, partial [Manihot esculenta] |
| JMFF009A02 | Sequence | 396 | 011927 (4) | gb|KDP26452.1| | 1e-18 | hypothetical protein JCGZ_17610 [Jatropha curcas] | 669 | 005621 (3) | gb|AIU48905.1| | 8e-67 | transducin/WD40 repeat-like superfamily protein, partial [Vitis vinifera] |
| JMSF010B14 | Sequence | 251 | 011927 (4) | ref|XP_009764022.1| | 8e-04 | PREDICTED: WD repeat-containing protein 70 [Nicotiana sylvestris] | 741 | 005621 (3) | gb|AIU48905.1| | 6e-78 | transducin/WD40 repeat-like superfamily protein, partial [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMFF008F06+ ATCAGGTGTTTGCAACGAGTGGGGATAA
____________________________________________________________
consensus ATCAGGTGTTTGCAACGAGTGGGGATAA
. : . : . : . : . : . :
rJMFF008F06+ GCGCGAGGGAGGAACTCATATCCTATATGATCCAACCCTCAGTGAAAGAGGAGCTCTTGT
rJMSF010B14+ CAGTGAAAGAGGAGCTCTTGT
____________________________________________________________
consensus GCGCGAGGGAGGAACTCATATCCTATATGATCCAACCCTCAGTGAAAGAGGAGCTCTTGT
. : . : . : . : . : . :
rJMFF008F06+ TTGTGTTGCACGTGCACCGAGGACAAAGTCTGTTGATGATTTCCAGGCACAGCCTGTGAT
rJMFF009A02+ GTCTGTTGATGATTTCCAGGCACAGCCTGTGAT
rJMSF010B14+ TTGTGTTGCACGTGCACCGAGGACAAAGTCTGTTGATGATTTCCAGGCACAGCCTGTGAT
____________________________________________________________
consensus TTGTGTTGCACGTGCACCGAGGACAAAGTCTGTTGATGATTTCCAGGCACAGCCTGTGAT
. : . : . : . : . : . :
rJMFF008F06+ TCACAATCCACATGCACTACCCTTATTCCGGGACCAGCCTAGCCGTAAACGCCAGCGCGA
rJMFF009A02+ TCACAATCCACATGCACTACCCTTATTCCGGGACCAGCCTAGCCGTAAACGCCAGCGCGA
rJMSF010B14+ TCACAATCCACATGCACTACCCTTATTCCGGGACCAGCCTAGCCGTAAACGCCAGCGCGA
____________________________________________________________
consensus TCACAATCCACATGCACTACCCTTATTCCGGGACCAGCCTAGCCGTAAACGCCAGCGCGA
. : . : . : . : . : . :
rJMFF008F06+ GAAAATGTTGAAAGACCCCCTCAAGGCTCATAAGCCTGAACTGCCTATAACAGGGCCTGG
rJMFF009A02+ GAAAATGTTGAAAGACCCCCTCAAGGCTCATAAGCCTGAACTGCCTATAACAGGGCCTGG
rJMSF010B14+ GAAAATGTTGAAAGACCCCCTCAAGGCTCATAAGCCTGAACTGCCTATAACAGGGCCTGG
____________________________________________________________
consensus GAAAATGTTGAAAGACCCCCTCAAGGCTCATAAGCCTGAACTGCCTATAACAGGGCCTGG
. : . : . : . : . : . :
rJMFF008F06+ TCACGGTGGAAGGGTCGGTTCAACCAAGGGAAGCTTGTTAACACAATACCTTCTCAAGCA
rJMFF009A02+ TCACGGTGGAAGGGTCGGTTCAACCAAGGGAAGCTTGTTAACACAATACCTTCTCAAGCA
rJMSF010B14+ TCACGGTGGAAGGGTCGGTTCAACCAAGGGAAGCTTGTTAACACAATACCTTCTCAAGCA
____________________________________________________________
consensus TCACGGTGGAAGGGTCGGTTCAACCAAGGGAAGCTTGTTAACACAATACCTTCTCAAGCA
. : . : . : . : . : . :
rJMFF008F06+ AGGCGGGTTGATCAAGGAGACATGGATGGACGAAGATCCTAGAGAAGCTATCCTAAAGTA
rJMFF009A02+ AGGCGGGTTGATCAAGGAGACATGGATGGACGAAGATCCTAGAGAAGCTATCCTAAAGTA
rJMSF010B14+ AGGCGGGTTGATCAAGGAGACATGGATGGACGAAGATCCTAGAGAAGCTATCCTAAAGTA
____________________________________________________________
consensus AGGCGGGTTGATCAAGGAGACATGGATGGACGAAGATCCTAGAGAAGCTATCCTAAAGTA
. : . : . : . : . : . :
rJMFF008F06+ CGCTGATGTAGCTGCAAATGAACCAAAATACGTGGCTCCAGCATACGCTCAAACACAGCC
rJMFF009A02+ CGCTGATGTAGCTGCAAATGAACCAAAATACGTGGCTCCAGCATACGCTCAAACACAGCC
rJMSF010B14+ CGCTGATGTAGCTGCAAATGAACCAAAATACGTGGCTCCAGCATACGCTCAAACACAGCC
____________________________________________________________
consensus CGCTGATGTAGCTGCAAATGAACCAAAATACGTGGCTCCAGCATACGCTCAAACACAGCC
. : . : . : . : . : . :
rJMFF008F06+ TCAACCGCTCTTCCAAGCATCGGATGATGAAGACGAAGAGAAGTGATTAGAAATTATTTC
rJMFF009A02+ TCAACCGCTCTTCCAAGCATCGGATGATGAAGACGAAGAGAAGTGATTAGAAATTATTTC
rJMSF010B14+ TCAACCGCTCTTCCAAGCATCGGATGATGAAGACGAAGAGAAGTGATTAGAAATTATTTC
____________________________________________________________
consensus TCAACCGCTCTTCCAAGCATCGGATGATGAAGACGAAGAGAAGTGATTAGAAATTATTTC
. : . : . : . : . : . :
rJMFF008F06+ GAACTGTTCCCTGTTCCCGAGCTACTGATCCATTTGTTATCGTGAGCAGCGTAATTGGCT
rJMFF009A02+ GAACTGTTCCCTGTTCCCGAGCTACTGATCCATTTGTTATCGTGAGCAGCGTAATTGGCT
rJMSF010B14+ GAACTGTTCCCTGTTCCCGAGCTACTGATCCATTTGTTATCGTGAGCAGCGTAATTGGCT
____________________________________________________________
consensus GAACTGTTCCCTGTTCCCGAGCTACTGATCCATTTGTTATCGTGAGCAGCGTAATTGGCT
. : . : . : . : . : . :
rJMFF008F06+ AATTGCTTCTGATCATTCTGCATATTGAGTGAATTTCTTGGATGAATTTGTTGCAGCTCA
rJMFF009A02+ AATTGCTTCTGATCATTCTGCATATTGAGTGAATTTCTTGGATGAATTTGTTGCAGCTCA
rJMSF010B14+ AATTGCTTCTGATCATTCTGCATATTGAGTGAATTTCTTGGATGAATTTGTTGCAGCTCA
____________________________________________________________
consensus AATTGCTTCTGATCATTCTGCATATTGAGTGAATTTCTTGGATGAATTTGTTGCAGCTCA
. : . : . : . : . : . :
rJMFF008F06+ ACTATGTGGATTAGAGTGGAAAATGCATTTGTATGCTAGTCTTTATCAGGATAGTTGAAT
rJMFF009A02+ ACTATGTGGATTAGAGTGGAAAATGCATTTGTATGCTAGTCTTTATCAGGATAGTTGAAT
rJMSF010B14+ ACTATGTGGATTAGAGTGGAAAATGCATTTGTATGCTAGTCTTTATCAGGATAGTTGAAT
____________________________________________________________
consensus ACTATGTGGATTAGAGTGGAAAATGCATTTGTATGCTAGTCTTTATCAGGATAGTTGAAT
. : . : . : . : . : . :
rJMFF008F06+ TGGAATTTGGTAACCATACAATACAAAGTACTTTTTGGGAACTTGATGCTCTTGATGTAA
rJMFF009A02+ TGGAATTTGGTAACCATACAATACAAAGTACTTTTTGGGAACTTGATGCTCTTGATGTAA
rJMSF010B14+ TGGAATTTGGTAACCATACAATACAAAGTACTTTTTGGGAACTTGATGCTCTTGATGTAA
____________________________________________________________
consensus TGGAATTTGGTAACCATACAATACAAAGTACTTTTTGGGAACTTGATGCTCTTGATGTAA
. : . : . : . : . : . :
rJMFF008F06+ TCTTGTTCTAGTTTATGTAAATCAGATCAGGA
rJMFF009A02+ TCTTGTTCTAGTTTATGTAAATCAGATCAGGA
rJMSF010B14+ TCTTGTTCTAGTTTATGTAAATCAGATCAGGATGAAAATCCTGTTTCTTCAAATTCCCAA
____________________________________________________________
consensus TCTTGTTCTAGTTTATGTAAATCAGATCAGGATGAAAATCCTGTTTCTTCAAATTCCCAA