Contig 005619:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009N11Sequence775005619 (4)emb|CDP14820.1|3e-14unnamed protein product [Coffea canephora]
JMSF022G05Sequence774005619 (4)ref|XP_008381595.1|9e-16PREDICTED: LOW QUALITY PROTEIN: protein TPX2 [Malus domestica]
JMSF022J02Sequence684010692 (3)ref|XP_009772967.1|9e-40PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator773005619 (4)ref|XP_008381595.1|9e-16PREDICTED: LOW QUALITY PROTEIN: protein TPX2 [Malus domestica]
JMSF047H11Sequence641019025gb|ABX82324.1|2e-21SAD2-2 [synthetic construct]774005619 (4)emb|CDP14820.1|3e-14unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF022G05+                                       CTAAGAAGCACCAGACAGCTAAACAATAGCA
rJMSF022J02+                                                ACCAGACAGCTNAACAATAGCC
                      ____________________________________________________________
consensus                                          CTAAGAAGCACCAGACAGCTAAACAATAGCC
 
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rJMSF022G05+          AGTATGATCTCAAACCCCTCTGCGTTGAAGTCAAAATCTGAATCACAAGTGAAAAGCATT
rJMSF022J02+          AGTATGATCTCAAACCCNTCTGCGTTGAAGTCAAAATCTGAATCACAAGTGAAAAGCATT
                      ____________________________________________________________
consensus             AGTATGATCTCAAACCCCTCTGCGTTGAAGTCAAAATCTGAATCACAAGTGAAAAGCATT
 
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rJMSF022G05+          AATCCAGCTAGTGCAAGAAGGAATACATATGAAAATTACATCTGAAACTCCAAAATTTGC
rJMSF022J02+          AATCCAGCTAGTGCAAGAAGGAATACATATGAAAATTACATCTGAAACTCCAAAATTTGC
                      ____________________________________________________________
consensus             AATCCAGCTAGTGCAAGAAGGAATACATATGAAAATTACATCTGAAACTCCAAAATTTGC
 
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rJMSF022G05+          TCAATAAAATCAAGCTATAAGGAGGCAAAAACTTGAAGAGGGGAAAGCTAGACAGTTTTG
rJMSF022J02+          TCAATAAAATCAAGCTATAAGGAGGCAAAAACTTGAAGAGGGGAAAGCTAGACAGTTTTG
rJMSF047H11+              TAAAATCAAGCTATAAGGAGGCAAAAACTTGNAGAGGGGAAAGCTAGACAGTTTTG
rJMSF009N11+              TAAAATCNAGCTATAAGGAGGCCAAAACTTGAAGAGGGGAAAGCTAGACAGTTTTG
                      ____________________________________________________________
consensus             TCAATAAAATCAAGCTATAAGGAGGCAAAAACTTGAAGAGGGGAAAGCTAGACAGTTTTG
 
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rJMSF022G05+          CTTATATCCTTAGCATCAAACCCCAAACTTTGCTCCATAAAATATGACCTCGAAAATTTA
rJMSF022J02+          CTTATATCCTTAGCATCAAACCCCAAACTTTGCTCCATAAAATATGACCTCGAAAATTTA
rJMSF047H11+          CTTATATCCTTAGCATCAAACCCCAAACTTTGCTCCATAAAATATGACCTCGAAAATTTA
rJMSF009N11+          CTTATATCCTTAGCATCAAACCCCAAACTTTGCTCCATAAAATATGACCTCGAAAATTTA
                      ____________________________________________________________
consensus             CTTATATCCTTAGCATCAAACCCCAAACTTTGCTCCATAAAATATGACCTCGAAAATTTA
 
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rJMSF022G05+          CCGGCAACTTGTTCACTTCAAGTGCTGAAACACCGACAGAAGACTGAAAGGATGGTATGG
rJMSF022J02+          CCGGCAACTTGTTCACTTCAAGTGCTGAAACACCGACAGAAGACTGAAAGGATGGTATGG
rJMSF047H11+          CCGGCAACTTGTTCACTTCAAGTGCTGAAACACCGACAGAAGACTGAAAGGATGGTATGG
rJMSF009N11+          CCGGCAACTTGTTCACTTCAAGTGCTGAAACACCGACAGAAGACTGAAAGGATGGTATGG
                      ____________________________________________________________
consensus             CCGGCAACTTGTTCACTTCAAGTGCTGAAACACCGACAGAAGACTGAAAGGATGGTATGG
 
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rJMSF022G05+          CTGGAATCAGTGCAGAGGAATCCTAAGCTTACACTGACAACGCCCAAGGAACCTGAACTT
rJMSF022J02+          CTGGAATCAGTGCAGAGGAATCCTAAGCTTACACTGACAACGCCCAAGGAACCTGAACTT
rJMSF047H11+          CTGGAATCAGTGCAGAGGAATCCTAAGCTTACACTGACAACGCCCAAGGAACCTGAACTT
rJMSF009N11+          CTGGAATCAGTGCAGAGGAATCCTAAGCTTACACTGACAACGCCCAAGGAACCTGAACTT
                      ____________________________________________________________
consensus             CTGGAATCAGTGCAGAGGAATCCTAAGCTTACACTGACAACGCCCAAGGAACCTGAACTT
 
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rJMSF022G05+          GAAATAGCTCAAACTTACCGTCCAGTAAAACTTTATAGCTCAGCTGAGTTGGAAGAAGAA
rJMSF022J02+          GAAATAGCTCAAACTTACCGTCCAGTAAAACTTTATAGCTCAGCTGAGTTGGAAGAAGAA
rJMSF047H11+          GAAATAGCTCAAACTTACCGTCCAGTAAAACTTTATAGCTCAGCTGAGTTGGAAGAAGAA
rJMSF009N11+          GAAATAGCTCAAACTTACCGTCCAGTAAAACTTTATAGCTCAGCTGAGTTGGAAGAAGAA
                      ____________________________________________________________
consensus             GAAATAGCTCAAACTTACCGTCCAGTAAAACTTTATAGCTCAGCTGAGTTGGAAGAAGAA
 
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rJMSF022G05+          ATGATGTCAAAATTCCCCAAGTTTAAGGCTCGCCCTCTAAATAAGAAGAATCCTATTGGA
rJMSF022J02+          ATGATGTCAAAATTCCCCAAGTTTAAGGCTCGCCCTCTAAATAAGAAGAATCCTATTGGA
rJMSF047H11+          ATGATGTCAAAATTCCCCAAGTTTAAGGCTCGCCCTCTAAATAAGAAGAATCCTATTGGA
rJMSF009N11+          ATGATGTCAAAATTCCCCAAGTTTAAGGCTCGCCCTCTAAATAAGAAGAATCCTATTGGA
                      ____________________________________________________________
consensus             ATGATGTCAAAATTCCCCAAGTTTAAGGCTCGCCCTCTAAATAAGAAGAATCCTATTGGA
 
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rJMSF022G05+          ATAAGTTTGACACTTTCACATATCATGATATGACGGTAATGTGACCGTTACATAATGCGT
rJMSF022J02+          ATAAGTTTGACACTTTCACATATCATGATATGACGGTAATGTGACCGTTACATAATGCGT
rJMSF047H11+          ATAAGTTTGACACTTTCACATATCATGATATGACGGTAATGTGACCGTTACATAATGCGT
rJMSF009N11+          ATAAGTTTGACACTTTCACATATCATGATATGACGGTAATGTGACCGTTACATAATGCGT
                      ____________________________________________________________
consensus             ATAAGTTTGACACTTTCACATATCATGATATGACGGTAATGTGACCGTTACATAATGCGT
 
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rJMSF022G05+          GCGCACTTCAGAGTGTTGCTCAACAACATGAAGGGAAAGAGAGGTTTTGGTTTTCTTCTC
rJMSF022J02+          GCGCACTTCAGAGTGTTGCTCAACAACATGAAGGGAAAGAGAGGTTTTGGTTTTCTTCTC
rJMSF047H11+          GCGCACTTCAGAGTGTTGCTCAACAACATGAAGGGAAAGAGAGGTTTTGGTTTTCTTCTC
rJMSF009N11+          GCGCACTTCAGAGTGTTGCTCAACAACATGAAGGGAAAGAGAGGTTTTGGTTTTCTTCTC
                      ____________________________________________________________
consensus             GCGCACTTCAGAGTGTTGCTCAACAACATGAAGGGAAAGAGAGGTTTTGGTTTTCTTCTC
 
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rJMSF022G05+          TATTATTACTATTTCATATGCTGTGGAGTTCTGAGTTGTCATTGCTCCCCCTCAAGAGGA
rJMSF022J02+          TATTATTACTATTTCATATGCTGTGGAGTTCTGAGTTGTCATTGCTCCCCCTCAAGAGGA
rJMSF047H11+          TATTATTACTATTTCATATGCTGTGGAGTTCTGAGTTGTCATTGCTCCCCCTCAAGAGGA
rJMSF009N11+          TATTATTACTATTTCATATGCTGTGGAGTTCTGAGTTGTCATTGCTCCCCCTCAAGAGGA
                      ____________________________________________________________
consensus             TATTATTACTATTTCATATGCTGTGGAGTTCTGAGTTGTCATTGCTCCCCCTCAAGAGGA
 
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rJMSF022G05+          AAGGGCACAGGGTACATGTTGGATTGGTTGGTACTTTGTATTGTTCTTAGCAGAGAGAAG
rJMSF022J02+          AAGGGCACAGGGTACATGTTGGATTGGTTGGTACTTTGTATTGTTCTTAGCAGAGAGAAG
rJMSF047H11+          AAGGGCACAGGGTACATGTTGGATTGGTTGGTACTTTGTATTGTTCTTAGCAGAGAGAAG
rJMSF009N11+          AAGGGCACAGGGTACATGTTGGATTGGTTGGTACTTTGTATTGTTCTTAGCAGAGAGAAG
                      ____________________________________________________________
consensus             AAGGGCACAGGGTACATGTTGGATTGGTTGGTACTTTGTATTGTTCTTAGCAGAGAGAAG
 
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rJMSF022G05+          CTTTATCTGTATTGTGGTCGTAT                                     
rJMSF022J02+          CTTTATCTGTATTGTGGTCGTATT                                    
rJMSF047H11+          CTTTATCTGTATTGTGGTCGTATTTATCTTAAGTATTTATGAGCATAATTGTTATTTTAT
rJMSF009N11+          CTTTATCTGTATTGTGGTCGTATTTATCTTAAGTATTTATGAGCATAATTGTTATTTTAT
                      ____________________________________________________________
consensus             CTTTATCTGTATTGTGGTCGTATTTATCTTAAGTATTTATGAGCATAATTGTTATTTTAT
 
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rJMSF047H11+          TACTGTTTCATATGCTGTGGAGTTCTGGGTTGTCATTGCTCCCCCTCAAGAGGAAAGGGC
rJMSF009N11+          TACTGTTTCATATGCTGTGGAGTTCTGGGTTGTCATTGCTCCCCCTCAAGAGGAAAGGGC
                      ____________________________________________________________
consensus             TACTGTTTCATATGCTGTGGAGTTCTGGGTTGTCATTGCTCCCCCTCAAGAGGAAAGGGC
 
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rJMSF047H11+          ACATGGTACCATGTTGGATTGGTTGGTGCTTTGTATTGTTCTTGCAGAGAGAAGCTT   
rJMSF009N11+          ACATGGTA-CATGTTGGATTGGTTGGTGCTTTGTATTGTTCTTGCAGAGAGAAGCTTATC
                      ____________________________________________________________
consensus             ACATGGTACCATGTTGGATTGGTTGGTGCTTTGTATTGTTCTTGCAGAGAGAAGCTTATC