Contig 005618:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031J05Sequence593013179 (9)ref|XP_004249406.1|9e-119PREDICTED: coatomer subunit beta-1 [Solanum lycopersicum] ref|XP_010312217.1| PR774005618 (3)ref|XP_010432853.1|3e-106PREDICTED: coatomer subunit beta-1-like [Camelina sativa]
JMSF009J17Sequence400004989 (6)ref|XP_006348474.1|3e-26PREDICTED: coatomer subunit beta-1-like [Solanum tuberosum]731005618 (3)ref|XP_010432853.1|1e-72PREDICTED: coatomer subunit beta-1-like [Camelina sativa]
JMSF026G05Sequence680004989 (6)gb|EYU39437.1|8e-103hypothetical protein MIMGU_mgv1a0012202mg, partial [Erythranthe guttata] gb|EYU785005618 (3)ref|XP_010432853.1|3e-86PREDICTED: coatomer subunit beta-1-like [Camelina sativa]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+                                  TCAAGCAAGCAGATAAAAGCAAATATTAAGGTCTCC
                      ____________________________________________________________
consensus                                     TCAAGCAAGCAGATAAAAGCAAATATTAAGGTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          TCAACAGAGACTGGAGTCATTTTTGGCAATATTGTGTATGAGACCTCAAAGGTGCATGAA
rJMSF026G05+                                                          AAGGGGCATGAA
                      ____________________________________________________________
consensus             TCAACAGAGACTGGAGTCATTTTTGGCAATATTGTGTATGAGACCTCAAAGGTGCATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          CGGACTGTTGTCGTGCTAAATGACATTCATATTGATATCATGGATTACATCTCCCCAGCT
rJMSF026G05+          CGGACTGTTGTCGTGCTAAATGACATTCATATTGATATCATGGATTACATCTCCCCAGCT
rJMSF009J17+                                                           TCTCCCCAGCT
                      ____________________________________________________________
consensus             CGGACTGTTGTCGTGCTAAATGACATTCATATTGATATCATGGATTACATCTCCCCAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
rJMSF026G05+          GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
rJMSF009J17+          GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
                      ____________________________________________________________
consensus             GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
rJMSF026G05+          GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
rJMSF009J17+          GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
                      ____________________________________________________________
consensus             GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
rJMSF026G05+          AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
rJMSF009J17+          AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
                      ____________________________________________________________
consensus             AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
rJMSF026G05+          AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
rJMSF009J17+          AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
                      ____________________________________________________________
consensus             AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
rJMSF026G05+          CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
rJMSF009J17+          CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
                      ____________________________________________________________
consensus             CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
rJMSF026G05+          CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
rJMSF009J17+          CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
                      ____________________________________________________________
consensus             CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
rJMSF026G05+          ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
rJMSF009J17+          ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
                      ____________________________________________________________
consensus             ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          ATAGGGGACGATGTNAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
rJMSF026G05+          ATAGGGGACGATGTCAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
rJMSF009J17+          ATAGGGGACGATGTCAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
                      ____________________________________________________________
consensus             ATAGGGGACGATGTCAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
rJMSF026G05+          TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
rJMSF009J17+          TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
                      ____________________________________________________________
consensus             TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
rJMSF026G05+          GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
rJMSF009J17+          GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
                      ____________________________________________________________
consensus             GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF031J05+          ACTTTATGGAACTAAACC                                          
rJMSF026G05+          ACTTTATGGAACTAAACCCCTCATTATTAGCTTAATCCTTGTCTGCTATTTGCTGTATAT
rJMSF009J17+          ACTTTATGGAACTAAACCCCTCATTATTAGCTTAATCCTTGTCTGCTATTTGCTGTATAT
                      ____________________________________________________________
consensus             ACTTTATGGAACTAAACCCCTCATTATTAGCTTAATCCTTGTCTGCTATTTGCTGTATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026G05+          GAATTCGAGGCTTCAGATTCTTTATTTTGGTGTTGAGAAAACTTCTACAATAT       
rJMSF009J17+          GAATTCGAGGCTTCAGATTCTTTATTTTGGTGTTGAGAAAACTTCTACAATATGTATTAT
                      ____________________________________________________________
consensus             GAATTCGAGGCTTCAGATTCTTTATTTTGGTGTTGAGAAAACTTCTACAATATGTATTAT