Contig 005617:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C11Sequence581007379 (8)ref|XP_002283440.1|1e-52PREDICTED: aspartate--tRNA ligase, cytoplasmic [Vitis vinifera]552005617 (4)ref|XP_009791268.1|5e-92PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris]
JMFN034B07Sequence615005617 (4)ref|XP_009791268.1|3e-99PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris]
JMSF009H06Sequence394007379 (8)771005617 (4)ref|XP_009791268.1|1e-101PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris]
JMSF026H02Sequence654007379 (8)ref|XP_002283440.1|2e-61PREDICTED: aspartate--tRNA ligase, cytoplasmic [Vitis vinifera]746005617 (4)ref|XP_006345989.1|3e-121PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF026H02+                                                   CTATGTTTGATAGTTNGAA
                      ____________________________________________________________
consensus                                                      CTATGTTTGATAGTTNGAA
 
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rJMSF026H02+          TGAAAATTGCCAGAAGGAACTTGAAGCGATTGGGAGGCAGTATCCCTTTGAACCTTTAAA
                      ____________________________________________________________
consensus             TGAAAATTGCCAGAAGGAACTTGAAGCGATTGGGAGGCAGTATCCCTTTGAACCTTTAAA
 
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rJMFF001C11+                                                             TAAGGAAGC
JMFN034B07-                                       TTTGAAGAAGGGATTCAAATGCTTAAGGAAGC
rJMSF026H02+          GTATTTGCGAAAGACTTTGCGGCTTACATTTGAAGAAGGGATTCAAATGCTTAAGGAAGC
rJMSF009H06+                          TTGCGGCTTACATTTGAAGAAGGGATTCAAATGCTTAAGGAAGC
                      ____________________________________________________________
consensus             GTATTTGCGAAAGACTTTGCGGCTTACATTTGAAGAAGGGATTCAAATGCTTAAGGAAGC
 
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rJMFF001C11+          TGGCATTGATGTTGATCCACTTGGAGACCTAAATACTGAATCAGAGAGAAAGCTGGGGCA
JMFN034B07-           TGGCATTGATGTTGATCCACTTGGAGACCTAAATACTGAATCAGAGAGAAAGCTGGGGCA
rJMSF026H02+          TGGCATTGATGTTGATCCACTTGGAGACCTAAATACTGAATCAGAGAGAAAGCTGGGGCA
rJMSF009H06+          TGGCATTGATGTTGATCCGCTNGGAGACCTAAATACTGAATCAGAGAGAAAGCTGGGGCA
                      ____________________________________________________________
consensus             TGGCATTGATGTTGATCCACTTGGAGACCTAAATACTGAATCAGAGAGAAAGCTGGGGCA
 
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rJMFF001C11+          GCTTGTTTTGGAGAAGTATGGAACAGAATTCTATATACTTCCTCGTTATCCCTTGGCTGT
JMFN034B07-           GCTTGTTTTGGAGAAGTATGGAACAGAATTCTATATACTTCATCGTTATCCCTTGGCTGT
rJMSF026H02+          GCTTGTTTTGGAGAAGTATGGAACAGAATTCTATATACTTCATCGTTATCCCTTGGCTGT
rJMSF009H06+          GCTTGTTTTGGAGAAGTATGGAACAGAATTCTATATACTTCACCGTTATCCCTTGGCTGT
                      ____________________________________________________________
consensus             GCTTGTTTTGGAGAAGTATGGAACAGAATTCTATATACTTCATCGTTATCCCTTGGCTGT
 
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rJMFF001C11+          TCGGCCATTCTATACCATGCCTTGTTACGATAATTCTGCTTACAGTAATTCTTTTGATGT
JMFN034B07-           TCGGCCATTCTATACCATGCCTTGTTACGATAATTCTGCTTACAGTAATTCTTTTGATGT
rJMSF026H02+          TCGGCCATTCTATACCATGCCTTGTTACGATAATTCTGCTTACAGTAATTCTTTTGATGT
rJMSF009H06+          TCGGCCATTCTATACCATGCCTTGTTACGATAATTCTGCTTACAGTAATTCTTTTGATGT
                      ____________________________________________________________
consensus             TCGGCCATTCTATACCATGCCTTGTTACGATAATTCTGCTTACAGTAATTCTTTTGATGT
 
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rJMFF001C11+          CTTTATTCGAGGGGAAGAAATTATTTCAGGAGCTCAACGTGTCCATGTACCTGAATTATT
JMFN034B07-           CTTTATTCGAGGGGAAGAAATTATTTCAGGAGCTCAACGTGTCCATGTACCTGAATTATT
rJMSF026H02+          CTTTATTCGAGGGGAAGAAATTATTTCAGGAGCTCAACGTGTCCATGTACCTGAATTATT
rJMSF009H06+          CTTTATTCGAGGGGAAGAAATTATTTCAGGAGCTCAACGTGTCCATGTACCTGAATTATT
                      ____________________________________________________________
consensus             CTTTATTCGAGGGGAAGAAATTATTTCAGGAGCTCAACGTGTCCATGTACCTGAATTATT
 
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rJMFF001C11+          GACTAAGCGTGCAGAGGAATGTGGAATTGATGTTAAAACAATATCAACATATATTGATTC
JMFN034B07-           GACTAAGCGTGCAGAGGAATGTGGAATTGATGTTAAAACAATATCAACATATATTGATTC
rJMSF026H02+          GACTAAGCGTGCAGAGGAATGTGGAATTGATGTTAAAACAATATCAACATATATTGATTC
rJMSF009H06+          GACTAAGCGTGCTGAGGAATGTGGAATTGATGTTAAAACAATATCAACATATATTGATTC
                      ____________________________________________________________
consensus             GACTAAGCGTGCAGAGGAATGTGGAATTGATGTTAAAACAATATCAACATATATTGATTC
 
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rJMFF001C11+          ATTCAGGTACGGTGCACCTCCACATGGTGGATTTGGAGTGGGATTGGAGCGTGTGGTGAT
JMFN034B07-           ATTCAGGTACGGTGCACCTCCACATGGTGGATTTGGAGTGGGATTGGAGCGTGTGGTGAT
rJMSF026H02+          ATTCAGGTACGGTGCACCTCCACATGGTGGATTTGGAGTGGGATTGGAGCGTGTGGTGAT
rJMSF009H06+          ATTCAGGTACGGTGCACCTCCACATGGTGGATTTGGAGTGGGATTGGAGCGTGTGGTAAT
                      ____________________________________________________________
consensus             ATTCAGGTACGGTGCACCTCCACATGGTGGATTTGGAGTGGGATTGGAGCGTGTGGTGAT
 
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rJMFF001C11+          GCTTTTCTGCGCACTTAACAACATCCGTAAAACATCACTCTTCCCACGAGATCCGCAAAG
JMFN034B07-           GCTTTTCTGCGCACTTAACAACATCCGTAAAACATCACTCTTCCCACGAGATCCGCAAAG
rJMSF026H02+          GCTTTTCTGCGCACTTAACAACATCCGTAAAACATCACTCTTCCCACGAGATCCGCAAAG
rJMSF009H06+          GCTTTTCTGCGCACTTAACAACATCCGTAAAACATCGCTCTTCCCACGAGACCCACAAAG
                      ____________________________________________________________
consensus             GCTTTTCTGCGCACTTAACAACATCCGTAAAACATCACTCTTCCCACGAGATCCGCAAAG
 
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rJMFF001C11+          GATCGCTCCATGATTGCCTTGCCTTGCCGCTGGCTGACAGACTCGCAAAATCAAAATCA 
JMFN034B07-           GATCGCTCCATGATTGCCTTGCCTTGCCGCTGGCTGACAGACTCGCAAAATCAAAATCA 
rJMSF026H02+          GATCGCTCCATGATTGCCTTGCCTTGCCGCTGGCTGACAGACTCGCAAAATCAAAATCA 
rJMSF009H06+          GATCGCTCCATGATTGCCTTGCCTTGCCGCTGGCTGACAGACTCGCAAAATCAAAATCAT
                      ____________________________________________________________
consensus             GATCGCTCCATGATTGCCTTGCCTTGCCGCTGGCTGACAGACTCGCAAAATCAAAATCAT
 
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rJMSF009H06+          TTTTGAGTTGAATATTTGTTTTGAATTCTCTCCCCTCCCATATAGCAAGGCAGACAAATG
                      ____________________________________________________________
consensus             TTTTGAGTTGAATATTTGTTTTGAATTCTCTCCCCTCCCATATAGCAAGGCAGACAAATG
 
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rJMSF009H06+          ATACATTTCATCATAAAATATACATCTCTCCCTACGTGTATTGGTTTTTAACCAATATAG
                      ____________________________________________________________
consensus             ATACATTTCATCATAAAATATACATCTCTCCCTACGTGTATTGGTTTTTAACCAATATAG
 
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rJMSF009H06+          GAAGGAGAAGAGAGAGTACCTACTGAGCTCTACTGAAATAGGAAGTTAATCCATGAACTA
                      ____________________________________________________________
consensus             GAAGGAGAAGAGAGAGTACCTACTGAGCTCTACTGAAATAGGAAGTTAATCCATGAACTA
 
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rJMSF009H06+          AACCAGTTGCTCAATCTTAGAAGACTTCCACCTGTTCCCTTGATGTTTACTGGAAATATC
                      ____________________________________________________________
consensus             AACCAGTTGCTCAATCTTAGAAGACTTCCACCTGTTCCCTTGATGTTTACTGGAAATATC