| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF009F07 | Sequence | 362 | 005616 (2) | ref|XP_002511560.1| | 7e-52 | Protein HVA22, putative [Ricinus communis] gb|EEF52162.1| Protein HVA22, putativ | 732 | 005616 (2) | ref|XP_009620350.1| | 2e-95 | PREDICTED: HVA22-like protein a [Nicotiana tomentosiformis] ref|XP_009770547.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF009F07- TTCTTGAGATCG
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consensus TTCTTGAGATCG
. : . : . : . : . : . :
rJMSF009F07- ATCCGAGGGAAATATCCTAGTTTGCGACACTTTAAACTGTCGGGGTTACATAGAAACCTT
____________________________________________________________
consensus ATCCGAGGGAAATATCCTAGTTTGCGACACTTTAAACTGTCGGGGTTACATAGAAACCTT
. : . : . : . : . : . :
rJMSF009F07- TTTACAACACTAGACTACTATCCCCCACCGAGGAGCAGCAAGGGCATCTGCAGAAGCACT
____________________________________________________________
consensus TTTACAACACTAGACTACTATCCCCCACCGAGGAGCAGCAAGGGCATCTGCAGAAGCACT
. : . : . : . : . : . :
rJMSF009F07- CGTGTATCAATGGCTCAATCTCTGTGATCGTTGTCATAAAACACGTACCTGCTATTCCTG
____________________________________________________________
consensus CGTGTATCAATGGCTCAATCTCTGTGATCGTTGTCATAAAACACGTACCTGCTATTCCTG
. : . : . : . : . : . :
rJMSF009F07- GACTCCGGTTCTCTTTGAGCCTTGCGAATCATCTCCTCGAATGCTTGGGATCCATTCTCC
____________________________________________________________
consensus GACTCCGGTTCTCTTTGAGCCTTGCGAATCATCTCCTCGAATGCTTGGGATCCATTCTCC
. : . : . : . : . : . :
rJMSF009F07- GCAATGTACTTCTCTGCTGCAGTTAGAATGTCATCACGTTTACTGAAGACATCCTTCTTC
____________________________________________________________
consensus GCAATGTACTTCTCTGCTGCAGTTAGAATGTCATCACGTTTACTGAAGACATCCTTCTTC
. : . : . : . : . : . :
rJMSF009F07- CGTGGCACATACCAGATGTTAATAGCTTCTCGTTTAACTATGTATGGCCTAACAAAATGC
____________________________________________________________
consensus CGTGGCACATACCAGATGTTAATAGCTTCTCGTTTAACTATGTATGGCCTAACAAAATGC
. : . : . : . : . : . :
JMSF009F07+ TCGTACACATATGCAGCCCCGCTAAAGTAAGGTATGACCAACCAGCATGTTACGATTAGT
rJMSF009F07- TCGTACACATATGCAGCCCCGCTAAAGTAAGGTATGACCAACCAGCATGTTACGATTAGT
____________________________________________________________
consensus TCGTACACATATGCAGCCCCGCTAAAGTAAGGTATGACCAACCAGCATGTTACGATTAGT
. : . : . : . : . : . :
JMSF009F07+ TTTGCATATGACCAGATCAGGATCCACTCAATAAGTTTGGCAAATGTGAGCTCGAAAAGT
rJMSF009F07- TTTGCATATGACCAGATCAGGATCCACTCAATAAGTTTGGCAAATGTGAGCTCGAAAAGT
____________________________________________________________
consensus TTTGCATATGACCAGATCAGGATCCACTCAATAAGTTTGGCAAATGTGAGCTCGAAAAGT
. : . : . : . : . : . :
JMSF009F07+ GTAATCATGGAGTACAGAATCCAGTAGGTAAGCCATTGCTGATCATCGACGGGGTTCTTG
rJMSF009F07- GTAATCATGGAGTACAGAATCCAGTAGGTAAGCCATTGCTGATCATCGACGGGGTTCTTG
____________________________________________________________
consensus GTAATCATGGAGTACAGAATCCAGTAGGTAAGCCATTGCTGATCATCGACGGGGTTCTTG
. : . : . : . : . : . :
JMSF009F07+ GTCTCTATAGCCCTGATTGACTCATACAGAGGGTAGAGCAGACTAACCACAGGCCCAGCG
rJMSF009F07- GTCTCTATAGCCCTGATTGACTCATACAGAGGGTAGAGCAGACTAACCACAGGCCCAGCG
____________________________________________________________
consensus GTCTCTATAGCCCTGATTGACTCATACAGAGGGTAGAGCAGACTAACCACAGGCCCAGCG
. : . : . : . : . : . :
JMSF009F07+ AGCACATCAAAGTTCTGGAAGATCACTTTGA
rJMSF009F07- AGCACATCAAAGTTCTGGAAGATCACTTTGACAAGGTTTCCAATACCTCTAGATCCCATT
____________________________________________________________
consensus AGCACATCAAAGTTCTGGAAGATCACTTTGACAAGGTTTCCAATACCTCTAGATCCCATT
. : . : . : . : . : . :
rJMSF009F07- TCCAAGCTAAGATTTTTCTCTTTCCTTTCTTTATTTGTTTCTCAGCTGCTATTTTCTGTC
____________________________________________________________
consensus TCCAAGCTAAGATTTTTCTCTTTCCTTTCTTTATTTGTTTCTCAGCTGCTATTTTCTGTC