Contig 005613:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008L20Sequence292005613 (2)731005613 (2)ref|XP_010110280.1|4e-12Coatomer subunit beta'-2 [Morus notabilis] gb|EXC25800.1| Coatomer subunit beta'

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008L20-                                         GATTCGCTCCGAGCCCTACTCCCGCTCTTC
                      ____________________________________________________________
consensus                                           GATTCGCTCCGAGCCCTACTCCCGCTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008L20-           TCTGCCTCAAAGCCGCACGCCACAGCTCACTCTTACTCTCTCAGATCTACGCCTCCAGCG
rJMSF008L20+                                                           CGCCTCCAGCG
                      ____________________________________________________________
consensus             TCTGCCTCAAAGCCGCACGCCACAGCTCACTCTTACTCTCTCAGATCTACGCCTCCAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008L20-           CCATAGCCGCCGCCGACGCCACAGCCGCCGACGATGCCACCGCTACAGCTCACTCTCCAC
rJMSF008L20+          CCATAGCCGCCGCCGACGCCACAGCCGCCGACGATGCCACCGCTACAGCTCACTCTCCAC
                      ____________________________________________________________
consensus             CCATAGCCGCCGCCGACGCCACAGCCGCCGACGATGCCACCGCTACAGCTCACTCTCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008L20-           CGTTAGACCGTCGTTTCTTCCACCGATGCTGCCGCTACCACCGCCTCCCCTACGAAGACG
rJMSF008L20+          CGTTAGACCGTCGTTTCTTCCACCGATGCTGCCGCTACCACCGCCTCCCCTACGAAGACG
                      ____________________________________________________________
consensus             CGTTAGACCGTCGTTTCTTCCACCGATGCTGCCGCTACCACCGCCTCCCCTACGAAGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008L20-           CTGACGCCTCTACCCAGCCACCGCCGTCCACTGCCGCGAACACGCAGTGGATGGTGAGAC
rJMSF008L20+          CTGACGCCTCTACCCAGCCACCGCCGTCCACTGCCGCGAACACGCAGTGGATGGTGAGAC
                      ____________________________________________________________
consensus             CTGACGCCTCTACCCAGCCACCGCCGTCCACTGCCGCGAACACGCAGTGGATGGTGAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF008L20-           GATGGACAAAATATTTTGGACT                                      
rJMSF008L20+          GATGGACAAAATATTTTGGACTTGAAGAAGCTATTAAGCTGATGGTATGGAATAACAATG
                      ____________________________________________________________
consensus             GATGGACAAAATATTTTGGACTTGAAGAAGCTATTAAGCTGATGGTATGGAATAACAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          ATCAAAGTTTCAGCCTCAGGTTTATAGTTTTTAGTCTCCTTTTCTGGTTCAACATAGAGC
                      ____________________________________________________________
consensus             ATCAAAGTTTCAGCCTCAGGTTTATAGTTTTTAGTCTCCTTTTCTGGTTCAACATAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          CTTTAAAAAGGACCATCTGAATCACAATTTATTCACTTCATGGCAGTTTTTCTTTATACT
                      ____________________________________________________________
consensus             CTTTAAAAAGGACCATCTGAATCACAATTTATTCACTTCATGGCAGTTTTTCTTTATACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          TGAAAACACATTGAATTATGGTCTTGAAAGGGTCTGGGCTATTGGTTATACCAAAGGTTC
                      ____________________________________________________________
consensus             TGAAAACACATTGAATTATGGTCTTGAAAGGGTCTGGGCTATTGGTTATACCAAAGGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          AAGAAGGGTTGTGATTGGTTATGAGGAGGGAACTATTATGGTTAAAAAGATCAGATTACG
                      ____________________________________________________________
consensus             AAGAAGGGTTGTGATTGGTTATGAGGAGGGAACTATTATGGTTAAAAAGATCAGATTACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          AGACTGCAAGTACTAATTATGAAACTCATCAAACACAATCTATTTACAAGATCGAGTTTG
                      ____________________________________________________________
consensus             AGACTGCAAGTACTAATTATGAAACTCATCAAACACAATCTATTTACAAGATCGAGTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          CTGTTATTGGAGATTGATGGGTGTTGAAGAGAAACAAATGTGGATTGATGGCGGGAAAGC
                      ____________________________________________________________
consensus             CTGTTATTGGAGATTGATGGGTGTTGAAGAGAAACAAATGTGGATTGATGGCGGGAAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          TGGCATTTCAGCATCACCTCCATCCCAAACCAACTGATTTTAATGTAGATTGTCATTTAT
                      ____________________________________________________________
consensus             TGGCATTTCAGCATCACCTCCATCCCAAACCAACTGATTTTAATGTAGATTGTCATTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008L20+          GAAGACTATTATATTATTGTTTAGACTTCAATTGATTATATTATTACTTACCTGATTGAT
                      ____________________________________________________________
consensus             GAAGACTATTATATTATTGTTTAGACTTCAATTGATTATATTATTACTTACCTGATTGAT