Contig 005612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008K19Sequence297007777 (4)756005612 (2)ref|XP_009612799.1|318PREDICTED: uncharacterized protein LOC104106036 [Nicotiana tomentosiformis] ref|
JMSF012K15Sequence497007777 (4)ref|XP_009786598.1|5e-15PREDICTED: uncharacterized protein LOC104234688 isoform X3 [Nicotiana sylvestri726005612 (2)ref|XP_009612799.1|317PREDICTED: uncharacterized protein LOC104106036 [Nicotiana tomentosiformis] ref|

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+                 TGTCTTAAAAGTATTCTTCAACAGGAGTGGTGCCTATTATGACCATAGCTTTT
rJMSF008K19+                                      CAGGAGTGGTGCCTATTATGACCATAGCTTTT
                      ____________________________________________________________
consensus                    TGTCTTAAAAGTATTCTTCAACAGGAGTGGTGCCTATTATGACCATAGCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          TCAATGAGCATGGGTTGGCCATATTAGAGGATTTGGTGATTACACTGGCAGAAGGGGCTG
rJMSF008K19+          TCAATGAGCATGGGTTGGCCATATTAGAGGATTTGGTGATTACACTGGCAGAAGGGGCTG
                      ____________________________________________________________
consensus             TCAATGAGCATGGGTTGGCCATATTAGAGGATTTGGTGATTACACTGGCAGAAGGGGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          CAAGCATGTATTTGGAGCTTATTTCAGTTGATAGTAGAGTGTCAAATGAAATGAACAGTC
rJMSF008K19+          CAAGCATGTATTTGGAGCTTATTTCAGTTGATAGTAGAGTGTCAAATGAAATGAACAGTC
                      ____________________________________________________________
consensus             CAAGCATGTATTTGGAGCTTATTTCAGTTGATAGTAGAGTGTCAAATGAAATGAACAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          TTGGTTTGAGTTTGTGTACTTTATCTACCCGAGAACTACAGAAATTGAGGAATGAGGTGG
rJMSF008K19+          TTGGTTTGAGTTTGTGTACTTTATCTACCCGAGAACTACAGAAATTGAGGAATGAGGTGG
                      ____________________________________________________________
consensus             TTGGTTTGAGTTTGTGTACTTTATCTACCCGAGAACTACAGAAATTGAGGAATGAGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          CCATGCACAGGTGGTTGCGTCAGAACATGGAAGCAGTTGTATCAATGTATGAAGACCGCT
rJMSF008K19+          CCATGCACAGGTGGTTGCGTCAGAACATGGAAGCAGTTGTATCAATGTATGAAGACCGCT
                      ____________________________________________________________
consensus             CCATGCACAGGTGGTTGCGTCAGAACATGGAAGCAGTTGTATCAATGTATGAAGACCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          TTGACTTGAGCACATTTGAATGCCAACCCATTGGGGAACGCGGTAAAAGAAAAGATGAAA
rJMSF008K19+          TTGACTTGAGCACATTTGAATGCCAACCCATTGGGGAACGCGGTAAAAGAAAAGATGAAA
                      ____________________________________________________________
consensus             TTGACTTGAGCACATTTGAATGCCAACCCATTGGGGAACGCGGTAAAAGAAAAGATGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          ACCATCATTGGTGGAAAAAGCTTGGTGTGATGAGATCTGAAACTGTAGCATCTCCCTTAC
rJMSF008K19+          ACCATCATTGGTGGAAAAAGCTTGGTGTGATGAGATCTGAAACTGTAGCATCTCCCTTAC
                      ____________________________________________________________
consensus             ACCATCATTGGTGGAAAAAGCTTGGTGTGATGAGATCTGAAACTGTAGCATCTCCCTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          ATGTTGCCTTTATCTACCAAGTATCTATAGCTGTTAAGCGCACCAAAGAACTAAGGTCCC
rJMSF008K19+          ATGTTGCCTTTATCTACCAAGTATCTATAGCTGTTAAGCGCACCAAAGAACTAAGGTCCC
                      ____________________________________________________________
consensus             ATGTTGCCTTTATCTACCAAGTATCTATAGCTGTTAAGCGCACCAAAGAACTAAGGTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          TAACTGGGTGGAGATATTACTTCAGTCTTTTCCTTGAATTGTCTGATATCGCCATGCCCA
rJMSF008K19+          TAACTGGGTGGAGATATTACTTCAGTCTTTTCCTTGAATTGTCTGATATCGCCATGCCCA
                      ____________________________________________________________
consensus             TAACTGGGTGGAGATATTACTTCAGTCTTTTCCTTGAATTGTCTGATATCGCCATGCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          TAATAAGAACCGTCATAGCCAAGGTCAGCGATGCAATCTCATTCTTTCTAGTTTGCTTGA
rJMSF008K19+          TGATAAGAACCGTCATAGCCAAGGTCAGCGATGCAATCTCATTCTTTCTAGTTTGCTTGA
                      ____________________________________________________________
consensus             TGATAAGAACCGTCATAGCCAAGGTCAGCGATGCAATCTCATTCTTTCTAGTTTGCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          TTGGGCGATCTCTGGGACTCATCTATACTGGTATAAGGCAATCCCTTAGATGGAGGTGAG
rJMSF008K19+          TTGGGCGATCTCTGGGACTCATCTATACTGGTATAAGGCAATCCCTTAGATGGAGGTGAG
                      ____________________________________________________________
consensus             TTGGGCGATCTCTGGGACTCATCTATACTGGTATAAGGCAATCCCTTAGATGGAGGTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          ATATGGAGTGCGCTTATTCTTTCTACTAGTGACTGGATCATTTTCCTCGTCATGCTGTAC
rJMSF008K19+          ATATGGAGTGCGCTTATTCTTTCTACTAGTGACTGGATCATTTTCCTCGTCATGCTGTAC
                      ____________________________________________________________
consensus             ATATGGAGTGCGCTTATTCTTTCTACTAGTGACTGGATCATTTTCCTCGTCATGCTGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF012K15+          TCGCAAGAAAATT                                               
rJMSF008K19+          TCGCAAGAAAATTTTGATCATTGTATTCTCTTTAATGAAAATGTTTAGTCCTTAAACNAC
                      ____________________________________________________________
consensus             TCGCAAGAAAATTTTGATCATTGTATTCTCTTTAATGAAAATGTTTAGTCCTTAAACNAC