Contig 005611:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003J09Sequence227005611 (2)777005572 (4)ref|XP_006347620.1|108PREDICTED: HVA22-like protein e-like isoform X1 [Solanum tuberosum]
JMSF008I03Sequence261005572 (4)ref|XP_009613070.1|1e-05PREDICTED: HVA22-like protein e [Nicotiana tomentosiformis]790005611 (2)ref|XP_006347620.1|164PREDICTED: HVA22-like protein e-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF008I03-                                                            TGATATTTCA
                      ____________________________________________________________
consensus                                                               TGATATTTCA
 
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rJMSF008I03-          TGGTGAACATGGTCAAAGATCATACGATGGTACATATCTTTACTGGTCAACAAATTAAAT
                      ____________________________________________________________
consensus             TGGTGAACATGGTCAAAGATCATACGATGGTACATATCTTTACTGGTCAACAAATTAAAT
 
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rJMSF008I03-          CAAGAAAGGTAAAAAGAAGAATTCAGACAAGAAGGGAGCTTGTAAGATATCAAGGTGTGT
                      ____________________________________________________________
consensus             CAAGAAAGGTAAAAAGAAGAATTCAGACAAGAAGGGAGCTTGTAAGATATCAAGGTGTGT
 
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rJMSF008I03-          CCACGGTCCATCTCTTCTTCTTTTAGGAAACTTCATGATCACCCTTCTTAGGGGAAATGA
                      ____________________________________________________________
consensus             CCACGGTCCATCTCTTCTTCTTTTAGGAAACTTCATGATCACCCTTCTTAGGGGAAATGA
 
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rJMSF008I03-          AGTCCACAAATTTAGTTTTGGTTTTGGCCTTGCCATTTGGGGAATTTTGTTGTTGTGGTA
                      ____________________________________________________________
consensus             AGTCCACAAATTTAGTTTTGGTTTTGGCCTTGCCATTTGGGGAATTTTGTTGTTGTGGTA
 
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rJMSF008I03-          AGAATCTTGCTCCATATTTCTTGATAAGCTTTTCCCTAACCAGTTTGTTATATATGAAGG
                      ____________________________________________________________
consensus             AGAATCTTGCTCCATATTTCTTGATAAGCTTTTCCCTAACCAGTTTGTTATATATGAAGG
 
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rJMSF008I03-          CAGCCCCTCTGAACTGAGGCAGAACCAGCCACGCCACAAATAACAATTTCACATCATACC
                      ____________________________________________________________
consensus             CAGCCCCTCTGAACTGAGGCAGAACCAGCCACGCCACAAATAACAATTTCACATCATACC
 
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rJMSF008I03-          ATATTGGTATCCACTGAAGCATAGGTTCCAGTAGCATTTCCATGAGCGTGAGGAAAGAAT
                      ____________________________________________________________
consensus             ATATTGGTATCCACTGAAGCATAGGTTCCAGTAGCATTTCCATGAGCGTGAGGAAAGAAT
 
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rJMSF008I03-          ACAGTATCCAATATGCTAGCCACTGCTCATCATCCAATTTTGAAGTTGTTTCTATCGCTA
                      ____________________________________________________________
consensus             ACAGTATCCAATATGCTAGCCACTGCTCATCATCCAATTTTGAAGTTGTTTCTATCGCTA
 
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JMSF003J09+                                               ACCTGTCCTCGTATAGCGGAAGCT
rJMSF008I03-          CAACAGACGCATACATTAAACTGAACATTACGAGTAACCTGTCCTCGTATAGCGGAAGCT
                      ____________________________________________________________
consensus             CAACAGACGCATACATTAAACTGAACATTACGAGTAACCTGTCCTCGTATAGCGGAAGCT
 
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JMSF003J09+           TTAGGATCGCCCGAATATCTCCAGCCATGGTTGTGGAAATTGCCTCTGGAATGGTAAAC 
rJMSF008I03-          TTAGGATCGCCCGAATATCTCCAGCCATGGTTGTGGAAATTGCCTCTGGAATGGTAAACC
                      ____________________________________________________________
consensus             TTAGGATCGCCCGAATATCTCCAGCCATGGTTGTGGAAATTGCCTCTGGAATGGTAAACC
 
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rJMSF008I03-          TATAGGAAGTGTTTTGTCTACCACTTCTCTCCCGAATACGTGATGGTGCGTGTCCTGAAC
                      ____________________________________________________________
consensus             TATAGGAAGTGTTTTGTCTACCACTTCTCTCCCGAATACGTGATGGTGCGTGTCCTGAAC
 
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rJMSF008I03-          TCGGGAGCCGTGGGAGGACTATTTTGCTTAGAAGCACAGAGATGATACTTACAGAGGATA
                      ____________________________________________________________
consensus             TCGGGAGCCGTGGGAGGACTATTTTGCTTAGAAGCACAGAGATGATACTTACAGAGGATA
 
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rJMSF008I03-          GAGCAACATCATCACTGGCCCGGCGAGAGTATGAAGGTGAGTGATCAAAGTCCAAAAACG
                      ____________________________________________________________
consensus             GAGCAACATCATCACTGGCCCGGCGAGAGTATGAAGGTGAGTGATCAAAGTCCAAAAACG