Contig 005608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008E22Sequence363013248 (2)ref|XP_006358033.1|1e-18PREDICTED: uncharacterized protein LOC102602534 isoform X1 [Solanum tuberosum]722005608 (2)ref|XP_009804359.1|1e-47PREDICTED: N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1
JMSF038M04Sequence683013248 (2)ref|XP_009623022.1|1e-42PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit GPI1 is857005608 (2)ref|XP_009804359.1|2e-66PREDICTED: N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1

Alignment

This contig is upended


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rJMSF038M04+                                                   TTTTCAGGGGCAGAAAATG
                      ____________________________________________________________
consensus                                                      TTTTCAGGGGCAGAAAATG
 
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rJMSF038M04+          GAATCCTCTTCGGCAGAGATTAGACAGCTATGGTTACACAGTGGAGCAACATGTTGTTGG
                      ____________________________________________________________
consensus             GAATCCTCTTCGGCAGAGATTAGACAGCTATGGTTACACAGTGGAGCAACATGTTGTTGG
 
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rJMSF038M04+          CTCACTTCTATTTACTCCCCTGTTGCTTCTACTCCCAACGGTTTCTGCATTCTATATTTT
rJMSF008E22+                                                                   TTT
                      ____________________________________________________________
consensus             CTCACTTCTATTTACTCCCCTGTTGCTTCTACTCCCAACGGTTTCTGCATTCTATATTTT
 
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rJMSF038M04+          CTTCACAATTTTGAATGCAACTATAAGCTTGATATGCATAGTTATTGAACTTGGGATCTT
rJMSF008E22+          CTTCACAATTTTGAATGCAACTATAAGCTTGATATGCATAGTTATTGAACTTGGGATCTT
                      ____________________________________________________________
consensus             CTTCACAATTTTGAATGCAACTATAAGCTTGATATGCATAGTTATTGAACTTGGGATCTT
 
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rJMSF038M04+          AGTTATTCATGCCACACCATATACTAAAGTTTCTGTTTGGTTGGTGAGGAAGAAAAGATT
rJMSF008E22+          AGTTATTCATGCCACACCATATACTAAAGTTGCTGTTTGGTTGGTGAGGAAGAAAAGATT
                      ____________________________________________________________
consensus             AGTTATTCATGCCACACCATATACTAAAGTTTCTGTTTGGTTGGTGAGGAAGAAAAGATT
 
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rJMSF038M04+          TCCTTCTGGGATATGGTTTGAAATTGTGTCTAGTCAATGTGATGTTACCAATTCTTCACA
rJMSF008E22+          TCCTTCTGGGATATGGTTTGAAATTGTGTCTAGTCAATGTGATGTTACCAATTCTTCACA
                      ____________________________________________________________
consensus             TCCTTCTGGGATATGGTTTGAAATTGTGTCTAGTCAATGTGATGTTACCAATTCTTCACA
 
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rJMSF038M04+          CACTGGGTCTGCGGCTGAAATTAATCTGGAACCTAGTGCACATTGCTTCAAATCATTGGC
rJMSF008E22+          CACTGGGTCTGCGGCTGAAATTAATCTGGAACCTAGTGCACATTGCTTCAAATCATTGGC
                      ____________________________________________________________
consensus             CACTGGGTCTGCGGCTGAAATTAATCTGGAACCTAGTGCACATTGCTTCAAATCATTGGC
 
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rJMSF038M04+          TGTGGTTTCATTTTTGCGTGGCAACTGTCTGAGCTTAAGAGAAGTTGTTTCACCCCACTA
rJMSF008E22+          TGTGGTTTCATTTTTGCGTGGCAACTGTCTGAGCTTAAGAGAAGTTGTTTCACCCCACTA
                      ____________________________________________________________
consensus             TGTGGTTTCATTTTTGCGTGGCAACTGTCTGAGCTTAAGAGAAGTTGTTTCACCCCACTA
 
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rJMSF038M04+          TAGATGCGTGTTTTCAGCAATTTCAAGGTCCTCGATGGCATTGTCAGCTTATGGAATTCT
rJMSF008E22+          TAGATGCGTGTTTTCAGCAATTTCAAGGTCCTCGATGGCATTGTCAGCTTATGGAATTCT
                      ____________________________________________________________
consensus             TAGATGCGTGTTTTCAGCAATTTCAAGGTCCTCGATGGCATTGTCAGCTTATGGAATTCT
 
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rJMSF038M04+          TACGGGGAAAAGTATTTCGTATACTCTGGGCACTGGGCAACACATGAAGTTGCCATGGAT
rJMSF008E22+          TACGGGGAAAAGTATTTCGTATACTCTGGGCACTGGGCAACACATGAAGTTGCCATGGAT
                      ____________________________________________________________
consensus             TACGGGGAAAAGTATTTCGTATACTCTGGGCACTGGGCAACACATGAAGTTGCCATGGAT
 
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rJMSF038M04+          GGTCATCCCATGCAAAGCCTATTGGCGTCTTTGTCGTGATGCAATCCTTGCTAGAAGGGA
rJMSF008E22+          GGTCATCCCATGCAAAGCCTATTGGCGTCTTTGTCGTGATGCAATCCTTGCTAGAAGGGA
                      ____________________________________________________________
consensus             GGTCATCCCATGCAAAGCCTATTGGCGTCTTTGTCGTGATGCAATCCTTGCTAGAAGGGA
 
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rJMSF038M04+          AGACTGATTGCAGCTTGTAGCATTAAGCAGATAATGTTTGGTTCTTGCGGTGGCCTATCT
rJMSF008E22+          AGACTGATTGCAGCTTGTAGCATTAAGCAGATAATGTTTGGTTCTTGCGGTGGCCTATCT
                      ____________________________________________________________
consensus             AGACTGATTGCAGCTTGTAGCATTAAGCAGATAATGTTTGGTTCTTGCGGTGGCCTATCT
 
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rJMSF038M04+          ACAGTTCCAATTTCACATTTGATATCTTTTATCTAGTGCCTTTAAATTGTTTTCTCAGGT
rJMSF008E22+          ACAGTTCCAATTTCACATTTGATATCTTTTATCTAGTGCCTTTAAATTGTTTTCTCAGGT
                      ____________________________________________________________
consensus             ACAGTTCCAATTTCACATTTGATATCTTTTATCTAGTGCCTTTAAATTGTTTTCTCAGGT
 
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rJMSF038M04+          TAATGCAGTTTTAGTTTTACTTTAGTTTTTATTTTCTTAGTTTCTTTTGTTATACTGGCA
rJMSF008E22+          TAATGCAGTTTTAGTTTTACTTTAGTTTTTATTTTCTTAGTTTCTTTTGTTATACTGGCA
                      ____________________________________________________________
consensus             TAATGCAGTTTTAGTTTTACTTTAGTTTTTATTTTCTTAGTTTCTTTTGTTATACTGGCA
 
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rJMSF038M04+          ACCAAAGCATCCATATTTTGTACTTACGATAATGCAATTTAGGTTAATGA          
rJMSF008E22+          ACCAAAGCATCCATATTTTGTACTTA-GATAATGCAATTTAGGTTAATGACGCCGACTGA
                      ____________________________________________________________
consensus             ACCAAAGCATCCATATTTTGTACTTACGATAATGCAATTTAGGTTAATGACGCCGACTGA