Contig 005607:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF019E05+                                                          CAGAAAATAACG
                      ____________________________________________________________
consensus                                                             CAGAAAATAACG
 
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rJMSF019E05+          AACTGTCTGATCCCACTGGGCATCAAATGGCCAGGCTGCCACTAGAACCCATGCATTCAA
                      ____________________________________________________________
consensus             AACTGTCTGATCCCACTGGGCATCAAATGGCCAGGCTGCCACTAGAACCCATGCATTCAA
 
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rJMSF019E05+          AGGCTCTCATTCTTGCTGGTGAGTTTGGCTGCCTGGAAGAGATGCTAATATCTGTTGCAA
                      ____________________________________________________________
consensus             AGGCTCTCATTCTTGCTGGTGAGTTTGGCTGCCTGGAAGAGATGCTAATATCTGTTGCAA
 
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rJMSF019E05+          TGCTCTCTGTGGAATCCATCTTTTATGCTCCCCGTGAAAAGTTGGAAGAGTCTCGGAATG
rJMSF008A22+                                      TCCCCGTGAAAAGTTGGAAGAGTCTCGGAATG
                      ____________________________________________________________
consensus             TGCTCTCTGTGGAATCCATCTTTTATGCTCCCCGTGAAAAGTTGGAAGAGTCTCGGAATG
 
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rJMSF019E05+          CATTGAAAAGCTTTGCCAGTCCTGAAGGAGATCATTTGACTTTGCTTAATGTATATCGTG
rJMSF008A22+          CATTGAAAAGCTTTGCCAGTCCTGAAGGAGATCATTTGACTTTGCTTAATGTATATCGTG
                      ____________________________________________________________
consensus             CATTGAAAAGCTTTGCCAGTCCTGAAGGAGATCATTTGACTTTGCTTAATGTATATCGTG
 
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rJMSF019E05+          CTTCTATCGAATTCTTTGAGAAGAGCAAGATCACAAATGGCGAACTGAAAGCTGAAAAGA
rJMSF008A22+          CTTCTATCGAATTCTTTGAGAAGAGCAAGATCACAAATGGCGAACTGAAAGCTGAAAAGA
                      ____________________________________________________________
consensus             CTTCTATCGAATTCTTTGAGAAGAGCAAGATCACAAATGGCGAACTGAAAGCTGAAAAGA
 
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rJMSF019E05+          ATCTCAGAAAGTGGTGCAAGGATAATTTCATCAACAGCCGCTCCCTAAGACATGCACGTG
rJMSF008A22+          ATCTCAGAAAGTGGTGCAAGGATAATTTCATCAACAGCCGCTCCCTAAGACATGCACGTG
                      ____________________________________________________________
consensus             ATCTCAGAAAGTGGTGCAAGGATAATTTCATCAACAGCCGCTCCCTAAGACATGCACGTG
 
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rJMSF019E05+          ACATTCACAGTCAAATTCGCAGGAACGTTGAACAGATGGGTCTTCGGGTCTCTTCCTGTG
rJMSF008A22+          ACATTCACAGTCAAATTCGCAGGAACGTTGAACAGATGGGTCTTCGGGTCTCTTCCTGTG
                      ____________________________________________________________
consensus             ACATTCACAGTCAAATTCGCAGGAACGTTGAACAGATGGGTCTTCGGGTCTCTTCCTGTG
 
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rJMSF019E05+          GAGATGACATGCTTATCTTCCGTCGGTGCTTGGCTGCTTCATTTTTCCTTAACGCAGCTC
rJMSF008A22+          GAGATGACATGCTTATCTTCCGTCGGTGCTTGGCTGCTTCATTTTTCCTTAACGCAGCTC
                      ____________________________________________________________
consensus             GAGATGACATGCTTATCTTCCGTCGGTGCTTGGCTGCTTCATTTTTCCTTAACGCAGCTC
 
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rJMSF019E05+          TAAAGCAGCCCGATGGTACATACAGGGTTTTATCAAGTGGCTCGACAGTTCAAATCCACC
rJMSF008A22+          TAAAGCAGCCCGATGGTACATACAGGGTTTTATCAAGTGGCTCGACAGTTCAAATCCACC
                      ____________________________________________________________
consensus             TAAAGCAGCCCGATGGTACATACAGGGTTTTATCAAGTGGCTCGACAGTTCAAATCCACC
 
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rJMSF019E05+          CGTCTTCTGTGCTGTTTCGAGCAAAACCCGAGTGCATAGTATTTAATGAATTAGTGCAGA
rJMSF008A22+          CGTCTTCTGTGCTGTTTCGAGCAAAACCCGAGTGCATAGTATTTAATGAATTAGTGCAGA
                      ____________________________________________________________
consensus             CGTCTTCTGTGCTGTTTCGAGCAAAACCCGAGTGCATAGTATTTAATGAATTAGTGCAGA
 
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rJMSF019E05+          CTAACTACACGTATGTTCGCAACATCTCTAGAATCGATTATTTGTGGTTAGCTGAGCTCG
rJMSF008A22+          CTAACTACACGTATGTTCGCAACATCTCTAGAATCGATTATTTGTGGTTAGCTGAGCTCG
                      ____________________________________________________________
consensus             CTAACTACACGTATGTTCGCAACATCTCTAGAATCGATTATTTGTGGTTAGCTGAGCTCG
 
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rJMSF019E05+          CTCCTCATTTCTATGCCTTGCAAGACTGATTGATCTATTGATATTTAGTTCCTTAACATT
rJMSF008A22+          CTCCTCATTTCTATGCCTTGCAAGACTGATTGATCTATTGATATTTAGTTCCTTAACATT
                      ____________________________________________________________
consensus             CTCCTCATTTCTATGCCTTGCAAGACTGATTGATCTATTGATATTTAGTTCCTTAACATT
 
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rJMSF019E05+          CTTTGTTGTTTACTGGTCACTTCCTTTTTGTGTTTCTGGGAAAACTGCAAAATGGTAGGA
rJMSF008A22+          CTTTGTTGTTTACTGGTCACTTCCTTTTTGTGTTTCTGGGAAAACTGCAAAATGGTAGGA
                      ____________________________________________________________
consensus             CTTTGTTGTTTACTGGTCACTTCCTTTTTGTGTTTCTGGGAAAACTGCAAAATGGTAGGA
 
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rJMSF019E05+          TCAT                                                        
rJMSF008A22+          TCATTTGTACAATGTTGTTTTAGAGGGAAAAAAATTGAACCCAAATTCTGGGGGGTGGCC
                      ____________________________________________________________
consensus             TCATTTGTACAATGTTGTTTTAGAGGGAAAAAAATTGAACCCAAATTCTGGGGGGTGGCC